| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807339 | 5 (0.060) | 63 (0.710) | 49/176 | NT | 94.0% | intergenic (‑58/+94) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 4171877 = | 3 (0.030) | intergenic (+121/‑180) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
GCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTA > NC_000913/807241‑807435 | gCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATAc > 1:1427395/1‑99 (MQ=255) ccAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACc > 2:2087472‑M1/1‑98 (MQ=255) ccAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACc > 1:1140761‑M1/1‑98 (MQ=255) ccAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccg > 2:1553558‑M1/1‑92 (MQ=255) cAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccgg > 1:309826‑M1/1‑91 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggag < 1:1304702‑M1/99‑11 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggag > 1:1366045‑M1/1‑89 (MQ=255) gcgcCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggag > 2:1250658‑M1/1‑89 (MQ=255) ccAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggt > 2:659828‑M1/1‑86 (MQ=255) ccAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggt > 1:1911994‑M1/1‑86 (MQ=255) aGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtgg > 2:2064692‑M1/1‑84 (MQ=255) gACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggc > 1:1293079‑M1/1‑83 (MQ=255) cGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgg < 2:1067026‑M1/99‑19 (MQ=255) cGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAACGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgg < 1:2272966‑M1/99‑19 (MQ=255) aaaCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcag > 1:1620426‑M1/1‑77 (MQ=255) aaCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcagg > 2:1634765‑M1/1‑76 (MQ=255) aCTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcagga < 2:2048637‑M1/99‑25 (MQ=255) ctaaaaatgtGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAAAGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggac > 2:1556822‑M1/4‑74 (MQ=255) aaaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcc < 1:340865‑M1/99‑29 (MQ=255) aaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccg > 1:22415‑M1/1‑69 (MQ=255) aaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccg > 1:17063‑M1/1‑69 (MQ=255) aTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgc > 1:2223221‑M1/1‑68 (MQ=255) aTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgc > 1:1601059‑M1/1‑68 (MQ=255) gtgtTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgcca < 2:188706‑M1/99‑34 (MQ=255) gtgtTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggaagcccgcca > 1:2246630‑M1/1‑66 (MQ=255) tCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATCCcggcccggagggtggcgggcaggacgcccgccataaa < 2:1870738‑M1/99‑38 (MQ=255) tCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaa < 1:309622‑M1/99‑38 (MQ=255) acaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaact > 2:645045‑M1/1‑60 (MQ=255) acaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaact > 1:2229483‑M1/1‑60 (MQ=255) caGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactg > 1:224544‑M1/1‑59 (MQ=255) aGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgc > 1:2341627‑M1/1‑58 (MQ=255) ggTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgcc > 1:920418‑M1/1‑57 (MQ=255) ttGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccag > 1:905244‑M1/1‑55 (MQ=255) cTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggca > 2:10752‑M1/1‑52 (MQ=255) cTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggca > 1:1074481‑M1/1‑52 (MQ=255) cTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggca < 1:1495315‑M1/99‑48 (MQ=255) tCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcat < 2:1055854‑M1/99‑49 (MQ=255) gCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaat < 2:804278‑M1/99‑54 (MQ=255) tGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaag < 1:2189207‑M1/99‑58 (MQ=255) aaaTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagca > 2:162281‑M1/1‑40 (MQ=255) aaaTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagca > 1:1336052‑M1/1‑40 (MQ=255) aTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcaga > 2:1430901‑M1/1‑38 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa > 2:1771634‑M1/1‑37 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa > 2:417600‑M1/1‑37 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaa < 2:322302‑M1/99‑63 (MQ=255) aGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaag < 1:1966926‑M1/99‑64 (MQ=255) aGAAAAATGAATCCGTGGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaag < 2:13870‑M1/99‑64 (MQ=255) gAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaagg > 2:2153662‑M1/1‑35 (MQ=255) aaaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcc < 1:714816‑M1/99‑67 (MQ=255) aaaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcc > 2:1244974‑M1/1‑33 (MQ=255) aaaTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggcca < 1:733272‑M1/99‑68 (MQ=255) aTGAATCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatc > 2:1306457‑M1/1‑30 (MQ=255) aTCCGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctga > 2:1002393‑M1/1‑26 (MQ=255) cGTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacgg > 1:1025135‑M1/1‑23 (MQ=255) gTTGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacgga < 1:10752‑M1/99‑78 (MQ=255) ttGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggat < 1:940089‑M1/99‑79 (MQ=255) ttGAAGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggat < 1:507738‑M1/99‑79 (MQ=255) aaGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggc > 2:1501403‑M1/1‑18 (MQ=255) aaGCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggc > 2:1703214‑M1/1‑18 (MQ=255) gCCTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcct < 2:1266742‑M1/99‑84 (MQ=255) ccTGCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctt > 2:434361‑M1/1‑15 (MQ=255) tGCTTTTTTATACcgccccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttt < 2:1478234‑M1/99‑87 (MQ=255) gCTTTTTTATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggccttttt < 1:579480‑M1/99‑88 (MQ=255) ctccttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCaga < 2:1587972/95‑1 (MQ=255) ctccttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCaga > 2:1971664/5‑99 (MQ=255) ctccttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCaga < 1:1082317/95‑1 (MQ=255) tttttATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcg > 2:2308040‑M1/1‑9 (MQ=255) tttttATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcg < 2:77401‑M1/99‑91 (MQ=255) tttATACcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtt < 1:260304‑M1/99‑93 (MQ=255) ttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGa > 2:472679/1‑99 (MQ=255) ttATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGa < 1:1988860/99‑1 (MQ=255) tataCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttc < 2:666849‑M1/99‑95 (MQ=255) tataCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGAt < 2:2277322/99‑1 (MQ=255) tataCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGAt < 2:1141635/99‑1 (MQ=255) tataCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGAt > 2:2024210/1‑99 (MQ=255) ataCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGAtt < 2:2055436/99‑1 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta < 2:2268558‑M1/99‑97 (MQ=255) taCcggcccggagggtggcgggcaggacgcccgccataaactgccaggcatcaaattaagcagaaggccatcctgacggatggcctttttgcgtttcta < 2:697472‑M1/99‑97 (MQ=255) taCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTa > 1:474246/1‑99 (MQ=255) taCTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTa > 2:438597/1‑99 (MQ=255) | GCCAATGCCAGCGCCAGACGGGAAACTGAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGTAAAAAGACAAAAAGTTGTTTTTAATACCTTTAAGTGATACCAGATGGCATTGCGCCATCTGGCAGAGTGATTA > NC_000913/807241‑807435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |