| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,535,565 | C→G | 100% | A102P (GCG→CCG) | envZ ← | sensory histidine kinase EnvZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,535,565 | 0 | C | G | 100.0% | 330.4 / NA | 81 | A102P (GCG→CCG) | envZ | sensory histidine kinase EnvZ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (45/36); total (45/36) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACA > NC_000913/3535469‑3535656 | aGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGgcc > 2:1728406/1‑99 (MQ=255) gacgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCa > 1:696725/1‑99 (MQ=255) gacgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCa > 2:2016932/1‑99 (MQ=255) gacgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCa < 2:1125568/99‑1 (MQ=255) acgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCaa < 1:369404/99‑1 (MQ=255) acgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCaa < 1:1120539/99‑1 (MQ=255) cgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAAc > 2:2211000/1‑99 (MQ=255) gacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACg > 1:860113/1‑99 (MQ=255) gacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACg > 1:1655396/1‑99 (MQ=255) gacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGCTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACg < 2:255231/99‑1 (MQ=255) gacAGGCGAACTTTGGTTGACCTCAACGCGGTCTTCCACCGGGTCGTGCAGGTGCTGGATCTACTGGAGGTTTAAGAACTCTTAGTGTTTCGGCCaatg < 2:35848/99‑3 (MQ=255) ggCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGa < 1:655551/99‑1 (MQ=255) gAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCt > 2:1029434/1‑99 (MQ=255) aaCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTg > 1:1216922/1‑99 (MQ=255) aaCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTg < 2:424375/99‑1 (MQ=255) aCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGc > 2:1806603/1‑99 (MQ=255) aCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGc > 2:1680957/1‑99 (MQ=255) aCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGc > 2:1617908/1‑99 (MQ=255) aCTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGc > 1:586034/1‑99 (MQ=255) cTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGcc > 2:941374/1‑99 (MQ=255) cTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGcc < 1:316070/99‑1 (MQ=255) tttGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCctc < 2:362427/99‑1 (MQ=255) tgttgACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCtt < 2:1573593/99‑1 (MQ=255) tgttgACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCtt < 1:476351/99‑1 (MQ=255) ttgACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCg > 2:2272920/1‑99 (MQ=255) aCCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCa < 2:1247910/99‑1 (MQ=255) aCCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCa > 1:1887909/1‑99 (MQ=255) aaCGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTc > 2:1268628/1‑99 (MQ=255) gcgcACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGtt < 2:289986/99‑1 (MQ=255) cACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGa > 1:743425/1‑99 (MQ=255) cTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGt > 2:2238482/1‑99 (MQ=255) cTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGt > 1:2172358/1‑99 (MQ=255) ttCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTa > 1:663167/1‑99 (MQ=255) ccGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTaga < 1:1119989/99‑1 (MQ=255) gTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagaga < 2:1270740/99‑1 (MQ=255) gTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagaga < 2:1106442/99‑1 (MQ=255) gTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagaga > 1:373791/1‑99 (MQ=255) tCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagagag > 1:1373205/1‑99 (MQ=255) tCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagagag < 2:1542165/99‑1 (MQ=255) ggCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAgagagaga < 1:301650/99‑1 (MQ=255) gccgccCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGAt > 1:1113957/1‑99 (MQ=255) cccAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATcccc > 1:514450/1‑99 (MQ=255) ccAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCa < 1:1085810/99‑1 (MQ=255) ccAGTTGCTGCGCCATCTGATGGCTCAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCa > 2:106623/1‑99 (MQ=255) cAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAg > 2:958778/1‑99 (MQ=255) aGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGc < 2:2130537/99‑1 (MQ=255) gTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCt > 1:703262/1‑99 (MQ=255) gctgcGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCAc < 2:748450/99‑1 (MQ=255) ctgcGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACg < 2:818806/99‑1 (MQ=255) tgcGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACgg < 2:1975942/99‑1 (MQ=255) gcgcCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGt < 1:444287/99‑1 (MQ=255) gcCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAg > 1:1105449/1‑99 (MQ=255) gcCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAg > 1:536902/1‑99 (MQ=255) cATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAt < 2:1123926/99‑1 (MQ=255) cATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAt > 1:365202/1‑99 (MQ=255) aTCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtc > 1:53702/1‑99 (MQ=255) tCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtct < 2:1375054/99‑1 (MQ=255) tCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCCGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtct > 2:703157/1‑99 (MQ=255) cTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtctc < 2:716687/99‑1 (MQ=255) cTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtctc < 1:1536560/99‑1 (MQ=255) cTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGAtctc < 1:712603/99‑1 (MQ=255) tGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTcc > 2:1541249/1‑99 (MQ=255) tGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTcc > 1:489598/1‑99 (MQ=255) gATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTccc < 2:2159772/99‑1 (MQ=255) gATGACTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTccc < 1:769602/99‑1 (MQ=255) tGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGa < 1:1186358/99‑1 (MQ=255) tGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGa > 1:310137/1‑99 (MQ=255) ggCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGAc < 1:1659539/99‑1 (MQ=255) ggCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGAc > 2:1215415/1‑99 (MQ=255) cTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACgg > 2:639360/1‑99 (MQ=255) ttAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGa > 2:1167655/1‑99 (MQ=255) tAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGaa < 2:2184182/99‑1 (MQ=255) aGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAg < 2:2231755/99‑1 (MQ=255) aGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAg > 2:721349/1‑99 (MQ=255) aTTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCgg > 2:1643453/1‑99 (MQ=255) aTTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCgg > 1:2205067/1‑99 (MQ=255) aTTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCgg > 2:39771/1‑99 (MQ=255) ttCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCggg > 2:71347/1‑99 (MQ=255) tacATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCggg > 2:763096/3‑99 (MQ=255) tCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGa < 1:1164454/99‑1 (MQ=255) tAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGc > 1:325361/1‑99 (MQ=255) tgtTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGcaca > 1:672320/1‑99 (MQ=255) | AGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACA > NC_000913/3535469‑3535656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |