| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,560 | IS1 (+) +9 bp | 35.5% | coding (524‑532/597 nt) | fimE → | regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 32 (0.360) | 28/174 | NT | 32.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542568 | 60 (0.760) | coding (532/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 34 (0.380) | 26/176 | NT | 33.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542560 = | 60 (0.750) | coding (524/597 nt) | fimE | regulator for fimA | |||||
TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3584107‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT > NC_000913/4542560‑4542656 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCG > 2:1323007/1‑99 GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGT > 2:1935335/1‑99 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTG > 2:1271543/1‑99 GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGG < 2:1942900/99‑1 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGG < 2:670093/99‑1 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAA < 2:482124/99‑1 GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAA < 1:1927190/99‑1 GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAA > 2:1960782/1‑99 GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAA < 2:1938390/99‑1 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAG < 2:1176328/99‑1 CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATA < 1:951378/99‑1 GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATC < 2:1274967/99‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCA < 2:329506/99‑1 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAT > 2:687741/1‑99 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAT > 1:834799/1‑99 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAT > 1:359328/1‑99 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAT > 1:315536/1‑99 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAT > 1:1711055/1‑99 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAA < 2:1420147/99‑1 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGA > 2:884272/1‑99 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAA < 1:2141232/99‑1 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAA < 2:250604/99‑1 GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAA > 2:1704723/1‑99 TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAA > 1:1690907/1‑99 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAA > 2:1417957/1‑99 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAG < 1:1039679/99‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGA > 1:1332969/1‑99 AAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGG > 1:2263620/1‑99 AAACACTATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGAAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGG > 2:794473/1‑99 ATCAATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATT < 1:2140310/99‑1 ATAAGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAAC > 2:678022/1‑99 AGTTGGAGTCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTA < 2:1516334/99‑1 TCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAT > 2:1795573/1‑99 TCATTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAT > 1:1345544/1‑99 TTACCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAA < 1:612831/99‑1 CCATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT > 2:113751/1‑99 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3584107‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT > NC_000913/4542560‑4542656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |