BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	6 (0.070)	6/176	NT	6.7%	noncoding (768/768 nt)	IS1	repeat region
*	?	NC_000913	= 4542245	84 (0.950)	6 (0.070)	6/176	NT	6.7%	coding (209/597 nt)	fimE	regulator for fimA

Only 100 of 111 total aligned reads displayed.

GCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATAT  >  NC_000913/4542147‑4542343

gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc                                                                                                    <  1:1194840/99‑1 (MQ=255)

gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc                                                                                                    <  1:1241330/99‑1 (MQ=255)

gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc                                                                                                    >  1:2187895/1‑99 (MQ=255)

   tGGGTTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                                                                                                 <  2:118334/99‑1 (MQ=255)

   tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                                                                                                 <  1:2153849/99‑1 (MQ=255)

   tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                                                                                                 <  1:1069580/99‑1 (MQ=255)

   tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                                                                                                 >  1:1140025/1‑99 (MQ=255)

   tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                                                                                                 <  1:1174178/99‑1 (MQ=255)

       aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt                                                                                             >  1:757713/1‑99 (MQ=255)

          cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAc                                                                                          >  2:1242628/1‑99 (MQ=255)

          cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAc                                                                                          >  2:1848297/1‑99 (MQ=255)

          cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAc                                                                                          >  1:1583551/1‑99 (MQ=255)

            tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc                                                                                        <  1:597156/99‑1 (MQ=255)

             aTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCg                                                                                       <  1:1745962/99‑1 (MQ=255)

                 gTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAc                                                                                   >  2:2284174/1‑99 (MQ=255)

                   gAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGt                                                                                 <  1:1612217/99‑1 (MQ=255)

                    aaCTTCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtt                                                                                <  2:324945/99‑1 (MQ=255)

                    aaCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtt                                                                                >  1:404445/1‑99 (MQ=255)

                    aaCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtt                                                                                >  2:2037889/1‑99 (MQ=255)

                     aCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGttt                                                                               <  2:1819077/99‑1 (MQ=255)

                      cTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtttt                                                                              >  2:1498910/1‑99 (MQ=255)

                       tGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtg                                                                             >  1:1942795/1‑99 (MQ=255)

                       tGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtg                                                                             >  2:2222146/1‑99 (MQ=255)

                         cTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACGGTTCACCCGTTACGTTTtgat                                                                           >  2:358022/1‑99 (MQ=255)

                         cTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtgat                                                                           <  2:762695/99‑1 (MQ=255)

                          ttGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtgatg                                                                          >  2:2061467/1‑99 (MQ=255)

                          ttGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtgatg                                                                          >  1:1689679/1‑99 (MQ=255)

                            gATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAg                                                                        >  1:894088/1‑99 (MQ=255)

                             aTCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgtt                                                                       <  1:886227‑M2/99‑30 (MQ=255)

                              tCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCg                                                                      <  1:421030/99‑1 (MQ=255)

                              tCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCg                                                                      <  2:754324/99‑1 (MQ=255)

                               cTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgtttt                                                                     >  1:291830‑M2/1‑68 (MQ=255)

                                 gCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgttttat                                                                   <  2:1704623‑M2/99‑34 (MQ=255)

                                 gCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGa                                                                   >  1:950480/1‑99 (MQ=255)

                                    ttATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGc                                                                >  2:1227110/1‑99 (MQ=255)

                                    ttATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGc                                                                >  1:1398704/1‑99 (MQ=255)

                                       tCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGt                                                             <  2:1247183/99‑1 (MQ=255)

                                         aGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTgg                                                           <  2:2257858/99‑1 (MQ=255)

                                          ggACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGa                                                          >  2:2248291/1‑99 (MQ=255)

                                           gaccttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGaa                                                         <  1:1954194/99‑1 (MQ=255)

                                             ccttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACg                                                       >  2:1692982/1‑99 (MQ=255)

                                             ccttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACg                                                       >  1:1439678/1‑99 (MQ=255)

                                                 gaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTgg                                                   <  2:50226/99‑1 (MQ=255)

                                                  accttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGa                                                  <  2:344760/99‑1 (MQ=255)

                                                       aaTGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAg                                             >  2:1620112/1‑99 (MQ=255)

                                                         tGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGa                                           <  1:403620/99‑1 (MQ=255)

                                                         tGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTGCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGa                                           >  1:494434/1‑99 (MQ=255)

                                                          gAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                          <  2:680559‑M2/99‑59 (MQ=255)

                                                          gAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGaa                                          >  1:1149609/1‑99 (MQ=255)

                                                          gAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGaa                                          <  2:1632538/99‑1 (MQ=255)

                                                               tAGAATAAATATTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                     <  1:2264015‑M2/99‑64 (MQ=255)

                                                               tAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGc                                     <  2:1188926/99‑1 (MQ=255)

                                                               tAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGc                                     >  2:1450518/1‑99 (MQ=255)

                                                               tAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGc                                     <  2:1615546/99‑1 (MQ=255)

                                                                 gAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTa                                   >  2:1707986/1‑99 (MQ=255)

                                                                  aataaataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTaa                                  >  2:2003751/1‑99 (MQ=255)

                                                                  aagaaagaTTCGCCGAGTGAAGAACGGATTGTCTTGCGTTCACCCGTTTAGTCTTGATCATCGTGAAGCCGTGGAACGGTGGTCCCAGGGACGTGCTaa                                  <  2:1473408/96‑1 (MQ=255)

                                                                   ataaataTTCGCCGACTGAAGAACGGATTTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                 >  2:1397170‑M2/1‑32 (MQ=255)

                                                                   ataaataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAAc                                 >  2:1016431/1‑99 (MQ=255)

                                                                   ataaataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAAc                                 <  1:1509367/99‑1 (MQ=255)

                                                                      aataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTgg                              >  2:1728251/1‑99 (MQ=255)

                                                                      aataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTgg                              >  2:2168868/1‑99 (MQ=255)

                                                                      aataTTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTgg                              <  2:827402/99‑1 (MQ=255)

                                                                       atatTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGa                             >  2:1388034/1‑99 (MQ=255)

                                                                        tatTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGaa                            >  2:1674043/1‑99 (MQ=255)

                                                                        tatTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGaa                            >  1:2145127/1‑99 (MQ=255)

                                                                        tatTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGaa                            >  2:651670/1‑99 (MQ=255)

                                                                         atTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGaaa                           >  1:79771/1‑99 (MQ=255)

                                                                          ttCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAg                          >  2:1173359/1‑99 (MQ=255)

                                                                           tCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAAggaaggtgc                         <  1:1675824‑M2/99‑10 (MQ=255)

                                                                           tCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAgg                         <  1:715654/99‑1 (MQ=255)

                                                                              ccGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGgcgc                      <  1:1036092/99‑1 (MQ=255)

                                                                                gACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTg                    <  2:2064770/99‑1 (MQ=255)

                                                                                 aCTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGa                   >  2:1490331/1‑99 (MQ=255)

                                                                                    gaagaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCg                >  1:854978/1‑99 (MQ=255)

                                                                                     aagaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCgg               >  1:2088336/1‑99 (MQ=255)

                                                                                      agaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGa              >  2:647643/1‑99 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             >  2:222779/1‑99 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             <  1:2124283/99‑1 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             >  2:1699543/1‑99 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             >  2:1962506/1‑99 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             >  1:1500709/1‑99 (MQ=255)

                                                                                       gaaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGAc             <  2:1318980/99‑1 (MQ=255)

                                                                                        cccGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACt            >  1:2144826/3‑99 (MQ=255)

                                                                                        aaCGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCCTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACt            <  2:801326/99‑1 (MQ=255)

                                                                                           ggATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGTGCTGACCGGACTGAc         >  2:1046545/1‑99 (MQ=255)

                                                                                           ggATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGAc         <  1:155362/99‑1 (MQ=255)

                                                                                            gATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACg        >  1:152275/1‑99 (MQ=255)

                                                                                             aTTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc       <  1:556341/99‑1 (MQ=255)

                                                                                             aTTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc       >  2:2121921/1‑99 (MQ=255)

                                                                                             aTTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc       <  2:1690791/99‑1 (MQ=255)

                                                                                              ttttCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCt      >  2:808507/1‑99 (MQ=255)

                                                                                               tttCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCta     <  1:359646/99‑1 (MQ=255)

                                                                                               tttCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCta     >  1:750226/1‑99 (MQ=255)

                                                                                                 tCggtaatgactccaacttattggtagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc   >  2:2198742‑M2/1‑2 (MQ=255)

                                                                                                 tCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc   >  1:616032‑M2/1‑2 (MQ=255)

                                                                                                 tCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc   >  1:897629‑M2/1‑2 (MQ=255)

                                                                                                 tCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttcagaacgacagcgactta   >  2:373465‑M2/1‑2 (MQ=255)

                                                                                                 tCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCtata   <  1:1003868/99‑1 (MQ=255)

                                                                                                  cTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTatat  <  2:1672826/99‑1 (MQ=255)

GCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATAT  >  NC_000913/4542147‑4542343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.