BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3584195	NA (NA)	11 (0.070)	11/176	NT	6.3%	noncoding (768/768 nt)	IS1	repeat region
*	?	NC_000913	= 4542153	163 (0.990)	11 (0.070)	11/176	NT	6.3%	coding (117/597 nt)	fimE	regulator for fimA

Only 100 of 196 total aligned reads displayed.

CTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGT  >  NC_000913/4542055‑4542251

 ttACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGa                                                                                                   >  1:2337229/1‑99 (MQ=255)

  tACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGAt                                                                                                  <  1:3257720/99‑1 (MQ=255)

   aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATg                                                                                                 <  1:3624360/99‑1 (MQ=255)

   aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATg                                                                                                 <  2:457990/99‑1 (MQ=255)

    ccGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGc                                                                                                >  2:1748834/1‑99 (MQ=255)

     cGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCg                                                                                               <  1:836028/99‑1 (MQ=255)

      ggTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGt                                                                                              <  1:2008823/99‑1 (MQ=255)

       gTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTa                                                                                             <  1:1730414/99‑1 (MQ=255)

        tAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAt                                                                                            >  1:1608892/1‑99 (MQ=255)

          aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGggtaatgact                                                                                          <  2:1367810‑M2/99‑11 (MQ=255)

            gaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGt                                                                                        >  2:3090716/1‑99 (MQ=255)

              agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGa                                                                                      <  1:502870/99‑1 (MQ=255)

              agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGa                                                                                      <  2:1551835/99‑1 (MQ=255)

              agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGa                                                                                      <  1:2665532/99‑1 (MQ=255)

                ttCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAAc                                                                                    <  2:2398818/99‑1 (MQ=255)

                ttCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAAc                                                                                    <  2:4320825/99‑1 (MQ=255)

                 tCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACt                                                                                   <  2:1481639/99‑1 (MQ=255)

                 tCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACt                                                                                   <  1:892806/99‑1 (MQ=255)

                  cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTg                                                                                  <  1:1564173/99‑1 (MQ=255)

                    ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                >  1:637183/1‑99 (MQ=255)

                    ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                <  1:629094/99‑1 (MQ=255)

                    ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                <  2:641211/99‑1 (MQ=255)

                     gCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCtt                                                                               <  1:3510963/99‑1 (MQ=255)

                      ccATGATGCGGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTg                                                                              >  1:2993744/1‑99 (MQ=255)

                      ccATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTg                                                                              >  2:3026734/1‑99 (MQ=255)

                       cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa                                                                             <  2:2364579/99‑1 (MQ=255)

                        atgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt                                                                            >  1:3148519/1‑99 (MQ=255)

                         agatgCAGGCGGTTTGTTACGGGGCAACGAGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                           <  2:1106497/98‑1 (MQ=255)

                          gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCt                                                                          <  2:3096358/99‑1 (MQ=255)

                           atgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTg                                                                         <  2:2122307/99‑1 (MQ=255)

                            tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGggtaatgactccaacttattgatagtgt                                                                        >  1:2670155‑M2/1‑71 (MQ=255)

                            tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGc                                                                        <  1:94786/99‑1 (MQ=255)

                              cAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAt                                                                      <  2:3041321/99‑1 (MQ=255)

                               aGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAtt                                                                     >  1:1109943/1‑99 (MQ=255)

                                ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGggtaatgactccaacttattgatagtgtttta                                                                    <  1:3786154‑M2/99‑33 (MQ=255)

                                 gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                   <  2:1325911/99‑1 (MQ=255)

                                   ggTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCa                                                                 <  1:2857826/99‑1 (MQ=255)

                                    gTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAg                                                                >  1:1193572/1‑99 (MQ=255)

                                    gTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAg                                                                >  2:4204298/1‑99 (MQ=255)

                                     tttGTTACGGGGCAACGGGAGCCAGAGATTATTGTTTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAgg                                                               >  2:2756350/1‑99 (MQ=255)

                                     tttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAgg                                                               <  1:399100/99‑1 (MQ=255)

                                       tGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgac                                                             <  2:4193916/99‑1 (MQ=255)

                                         ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                           <  1:10907/99‑1 (MQ=255)

                                         ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                           >  1:3371898/1‑99 (MQ=255)

                                          tACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacctt                                                          <  1:1801866/99‑1 (MQ=255)

                                          tACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacctt                                                          <  2:3582993/99‑1 (MQ=255)

                                            cGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga                                                        <  2:3658978/99‑1 (MQ=255)

                                             ggggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgac                                                       <  1:282650/99‑1 (MQ=255)

                                              gggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacc                                                      <  1:3282120/99‑1 (MQ=255)

                                               ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacct                                                     <  1:2126890/99‑1 (MQ=255)

                                               ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacct                                                     <  2:1312232/99‑1 (MQ=255)

                                                  aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTaa                                                  <  2:1046672/99‑1 (MQ=255)

                                                   aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAAt                                                 >  2:2085128/1‑99 (MQ=255)

                                                   aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAAt                                                 >  1:2461761/1‑99 (MQ=255)

                                                    cGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATg                                                >  2:2803551/1‑99 (MQ=255)

                                                       gAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAg                                             >  2:2596820/1‑99 (MQ=255)

                                                          ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                          >  1:525891/1‑99 (MQ=255)

                                                          ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                          <  2:2930427/99‑1 (MQ=255)

                                                            agagATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGa                                        <  1:4156962/99‑1 (MQ=255)

                                                             gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                       >  2:741367/1‑99 (MQ=255)

                                                             gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                       <  1:776493/99‑1 (MQ=255)

                                                             gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                       >  1:536034/1‑99 (MQ=255)

                                                              agaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaat                                      >  2:571875/1‑99 (MQ=255)

                                                               gaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaata                                     >  2:1596176/1‑99 (MQ=255)

                                                               gaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaata                                     <  1:3685340/99‑1 (MQ=255)

                                                                attattGTCTTATTCTGTTGGCATATCGGCATGGGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                    >  2:601651‑M2/1‑35 (MQ=255)

                                                                attattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataa                                    >  1:2482176/1‑99 (MQ=255)

                                                                 ttattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaa                                   >  1:919722/1‑99 (MQ=255)

                                                                   attGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaata                                 <  2:400749/99‑1 (MQ=255)

                                                                    ttGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAatat                                >  1:2566799/1‑99 (MQ=255)

                                                                     tGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATAtt                               >  2:2886046/1‑99 (MQ=255)

                                                                         ttATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGcc                           <  1:2521918/99‑1 (MQ=255)

                                                                         ttATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGcc                           <  2:2654443/99‑1 (MQ=255)

                                                                           aTTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGa                         >  1:1283220/1‑99 (MQ=255)

                                                                           aTTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGa                         <  2:3370565/99‑1 (MQ=255)

                                                                            ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATG‑AGGTAGAATAAATATTCGCCGACt                       >  2:3682365/1‑99 (MQ=255)

                                                                             tCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACt                       >  1:4114117/1‑99 (MQ=255)

                                                                             tCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACt                       <  1:2837398/99‑1 (MQ=255)

                                                                             tCTGTTGGCATATCAGCATGGGATGCGTATTAGTGAACTGCTTAATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACt                       <  2:1357091/99‑1 (MQ=255)

                                                                              cTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTg                      >  1:205949/1‑99 (MQ=255)

                                                                              cTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTg                      >  2:354567/1‑99 (MQ=255)

                                                                               tGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTga                     >  2:3524742/1‑99 (MQ=255)

                                                                                gTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaa                    <  1:3868330/99‑1 (MQ=255)

                                                                                  tGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaaga                  >  1:3037997/1‑99 (MQ=255)

                                                                                   ggCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaagaa                 <  2:3842140/99‑1 (MQ=255)

                                                                                   ggCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaagaa                 >  1:3665722/1‑99 (MQ=255)

                                                                                     cATATCGGCATGGGggtaatgactccaacttattgatagtgttttatgttcagataatacccgatgactttgtcatgcagctccaccgattttgagaac               >  2:1964903‑M2/1‑14 (MQ=255)

                                                                                     cATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACg               <  1:99455/99‑1 (MQ=255)

                                                                                      atatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACgg              >  1:476530/1‑99 (MQ=255)

                                                                                      atatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACgg              >  1:3146646/1‑99 (MQ=255)

                                                                                      atatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACgg              <  2:1860679/99‑1 (MQ=255)

                                                                                       tatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa             >  1:1386560/1‑99 (MQ=255)

                                                                                        cccGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAt            >  1:3449178/3‑99 (MQ=255)

                                                                                         tCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAtt           >  2:4093756/1‑99 (MQ=255)

                                                                                           ggCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAtttt         <  2:3293400/99‑1 (MQ=255)

                                                                                            gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc        <  1:3567912/99‑1 (MQ=255)

                                                                                              aTGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTa      >  2:3909799/1‑99 (MQ=255)

                                                                                               tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc     >  2:4246179/1‑99 (MQ=255)

                                                                                               tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc     <  1:1930808/99‑1 (MQ=255)

                                                                                                 ggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCg   <  2:3740421/99‑1 (MQ=255)

CTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGT  >  NC_000913/4542055‑4542251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.