| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 2,867,842 | IS1 (–) +9 bp | 31.2% | coding (904‑912/1140 nt) | nlpD ← | murein hydrolase activator NlpD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2867842 = | 85 (0.790) | 41 (0.340) | 34/176 | NT | 30.2% | coding (912/1140 nt) | nlpD | murein hydrolase activator NlpD |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 2867850 | 85 (0.790) | 36 (0.300) | 31/176 | NT | 27.5% | coding (904/1140 nt) | nlpD | murein hydrolase activator NlpD |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
ACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2867753‑2867850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC < NC_000913/3584195‑3584098 ACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAG < 2:3132045/99‑1 GCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAA > 1:971399/1‑99 GCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAA < 2:2475566/99‑1 GCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAA > 1:627466/1‑99 GCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAA < 1:1520471/99‑1 ATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATG < 1:1482988/99‑1 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGAC < 2:1543064/99‑1 TGTCGTTATGGGCGTAGGCACTCAGGTAGTCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTC > 2:661143/1‑99 TGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTC < 1:156551/99‑1 GTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAgc < 2:1050509/99‑3 TTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACT > 2:2224680/1‑99 GGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATT < 2:490740/99‑1 GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATA < 2:707299/99‑1 AGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGT < 1:2012544/99‑1 CACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTT < 1:2505619/99‑1 CACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTT > 1:3075502/1‑99 CACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTT < 1:1985656/99‑1 TCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTA < 1:1155216/99‑1 AGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATG < 2:2821551/99‑1 GGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT > 2:2185048/1‑99 GGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < 1:267251/99‑1 TAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC > 1:514385/1‑99 AATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA < 2:3006599/99‑1 ATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG > 2:2305677/1‑99 ATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG > 2:2794717/1‑99 ATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG > 2:702205/1‑99 TCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA > 2:2971323/1‑99 TCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2048971/99‑1 TCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA > 1:1722327/1‑99 CATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT < 1:9223/99‑1 TATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC > 2:2401653/1‑99 TGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG < 1:2316590/99‑1 TGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT < 2:2516360/99‑1 ATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG > 1:3083364/1‑99 CAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG < 2:1642082/99‑1 ATTACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG < 2:1982978/99‑1 TACCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCT > 2:2980830/1‑99 CCGTAGCCGCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC > 2:2994702/1‑99 GCGCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTT < 1:2075828/99‑1 GCAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTG > 1:906116/1‑99 CAGCGCGTTACCAGCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGA > 1:2248890/1‑99 GCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAC < 1:1387587/99‑1 GCATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAC < 2:1968369/99‑1 ATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT > 2:2742062/1‑99 ATAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT > 2:112151/1‑99 AGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC < 1:575766/99‑1 ACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2867753‑2867850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC < NC_000913/3584195‑3584098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |