| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,831 | IS5 (–) +4 bp | 26.2% | intergenic (+198/‑281) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3652036 = | NA (NA) | 40 (0.340) | 33/176 | NT | 26.3% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4542834 | 107 (0.940) | intergenic (+201/‑281) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 36 (0.300) | 34/176 | NT | 24.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4542831 = | 107 (0.940) | intergenic (+198/‑284) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3653133‑3653230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGA > NC_000913/4542831‑4542924 ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCC < 2:980020/99‑1 AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCT > 1:1422165/1‑99 AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTG > 1:2012907/1‑99 TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGG > 2:1488454/1‑99 GTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTC > 1:275829/1‑99 TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGA < 2:3058383/99‑1 CTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATC > 1:389455/1‑99 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTC < 2:846574/99‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTC > 1:2741770/1‑99 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTC > 1:1880713/1‑99 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTC < 2:138864/99‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTT > 2:268529/1‑99 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTT > 2:876686/1‑99 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTC > 1:373507/1‑99 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCA < 2:2433716/99‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTTTTCTCTCCAA > 2:2628158/1‑99 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAA < 1:1600440/99‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGCTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAAC > 2:2016571/1‑99 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCA < 2:2175440/99‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCAC > 2:881589/1‑99 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACC < 1:531758/99‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCT > 2:619506/1‑99 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAT > 1:2199367/1‑99 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAT < 2:769826/99‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATG < 1:549203/99‑1 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGC > 2:830524/1‑99 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGC > 2:2959388/1‑99 ATCTCATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAA > 1:2837838/1‑99 CATATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATC < 1:2709931/99‑1 TATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTA < 2:1879827/99‑1 ATCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTAT < 2:2139658/99‑1 TCAGGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATA > 2:2715444/1‑99 GGGACTTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAAT > 1:2677556/1‑99 TTGTTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGA < 2:1846707/99‑1 TTCGCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAA < 2:926493/99‑1 GCACCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAA > 1:2459105/1‑99 CCTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAG < 1:2808587/99‑1 CTTCCCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGA > 2:1804014/1‑99 ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3653133‑3653230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGA > NC_000913/4542831‑4542924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |