BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	7 (0.060)	6/172	NT	5.9%	noncoding (1/768 nt)	IS1	repeat region
*	?	NC_000913	4542577 =	102 (0.970)	7 (0.060)	6/172	NT	5.9%	coding (541/597 nt)	fimE	regulator for fimA

Only 100 of 166 total aligned reads displayed.

GCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACA  >  NC_000913/4542480‑4542675

gCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCgg                                                                                                   >  1:2337173/1‑99 (MQ=255)

 cGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGa                                                                                                  <  1:1511669/99‑1 (MQ=255)

  gtggtgCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGAt                                                                                                 <  1:962812/99‑1 (MQ=255)

    ggtgCATATACTCGTTTAATTCAGGATTATCTCGGCCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTa                                                                                               <  2:2047006/99‑1 (MQ=255)

    ggtgCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTa                                                                                               <  1:448448/99‑1 (MQ=255)

    ggtgCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTa                                                                                               <  1:3105558/99‑1 (MQ=255)

      tgCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATg                                                                                             >  1:3096070/1‑99 (MQ=255)

        cAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGgg                                                                                           >  1:1825370‑M2/1‑97 (MQ=255)

         acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGATTATGGga                                                                                          <  2:3020405‑M2/11‑1 (MQ=255)

         aGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGg                                                                                          <  2:915779‑M2/99‑2 (MQ=255)

          gATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGgaa                                                                                         >  2:2133397/1‑99 (MQ=255)

           aTACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGgaaa                                                                                        <  1:71476/99‑1 (MQ=255)

           aTACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGgaaa                                                                                        <  1:2698479/99‑1 (MQ=255)

             gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGATTATGGgaaaga                                                                                      >  2:1525289‑M2/85‑99 (MQ=255)

             aCTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGgaaaga                                                                                      >  2:1555420/1‑99 (MQ=255)

               tCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGgaaagaaa                                                                                    <  1:2894678/99‑1 (MQ=255)

                  tttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAaataa                                                                                 >  1:1758335/1‑99 (MQ=255)

                  tttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAaataa                                                                                 <  2:1247191/99‑1 (MQ=255)

                   ttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAaataat                                                                                <  1:940330/99‑1 (MQ=255)

                    tAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAAtc                                                                               <  2:2949618/99‑1 (MQ=255)

                      aTTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAAtctc                                                                             >  1:810314/1‑99 (MQ=255)

                      aTTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAAtctc                                                                             >  1:830524/1‑99 (MQ=255)

                       ttCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCa                                                                            >  1:2970584/1‑99 (MQ=255)

                       ttCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCa                                                                            >  2:1848071/1‑99 (MQ=255)

                       ttCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCa                                                                            >  2:2677953/1‑99 (MQ=255)

                        tcattaccATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAt                                                                           >  1:2645634‑M2/9‑99 (MQ=255)

                          aGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATaa                                                                         >  1:2783651/1‑99 (MQ=255)

                           ggATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttac                                                                        >  1:1828251‑M2/1‑80 (MQ=255)

                           ggATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttac                                                                        >  2:2553314‑M2/1‑80 (MQ=255)

                           ggATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttac                                                                        >  1:791914‑M2/1‑80 (MQ=255)

                              ttATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGa                                                                     >  1:2315226/1‑99 (MQ=255)

                               tATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttactgat                                                                    >  1:2070542‑M2/1‑76 (MQ=255)

                                aTCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGaaa                                                                   <  2:2664854/99‑1 (MQ=255)

                                 tctcGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGaaaa                                                                  >  2:535470/1‑99 (MQ=255)

                                 tctcGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGaaaa                                                                  >  2:1272668/1‑99 (MQ=255)

                                  ctcGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGaaaaa                                                                 <  1:355505/99‑1 (MQ=255)

                                   tcGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAt                                                                >  2:2012907/1‑99 (MQ=255)

                                   tcGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAt                                                                <  2:1713932/99‑1 (MQ=255)

                                    cGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAtt                                                               <  2:1174237/99‑1 (MQ=255)

                                      ggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttactgatttagtgt                                                             <  2:2634656‑M2/99‑31 (MQ=255)

                                      ggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaa                                                             <  1:2166098/99‑1 (MQ=255)

                                      ggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaa                                                             >  2:1449372/1‑99 (MQ=255)

                                       gCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaaa                                                            <  2:1994147/99‑1 (MQ=255)

                                       gCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaaa                                                            >  2:354139/1‑99 (MQ=255)

                                            gAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGggtaatgactccaacttattgatagtgttttatgttca                                                       >  2:1851914‑M2/1‑61 (MQ=255)

                                             aaaTATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGggtaatgactccaacttattgatagtgttttatgttcag                                                      <  1:1355378‑M2/99‑40 (MQ=255)

                                              aaTATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaa                                                     <  2:2713946/99‑1 (MQ=255)

                                              aaTATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaa                                                     >  2:2482490/1‑99 (MQ=255)

                                              aaTATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaa                                                     >  2:748110/1‑99 (MQ=255)

                                               atatTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaag                                                    >  1:2703341/1‑99 (MQ=255)

                                               atatTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaag                                                    <  1:1906326/99‑1 (MQ=255)

                                                acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAaagagaaga                                                   <  2:1300424‑M2/50‑1 (MQ=255)

                                                  ttCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                 <  2:1125373‑M2/99‑43 (MQ=255)

                                                  ttCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAgg                                                 >  1:619506/1‑99 (MQ=255)

                                                  ttCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAgg                                                 <  1:596668/99‑1 (MQ=255)

                                                   tCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgtttt                                                >  1:1060816‑M2/1‑56 (MQ=255)

                                                    cGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGtt                                               <  1:554973/99‑1 (MQ=255)

                                                    cGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGtt                                               <  2:259057/99‑1 (MQ=255)

                                                    cGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGtt                                               <  2:1377663/99‑1 (MQ=255)

                                                    cGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGtt                                               <  2:3049114/99‑1 (MQ=255)

                                                    cGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGtt                                               <  1:1475539/99‑1 (MQ=255)

                                                     gCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                              <  2:1903846‑M2/99‑46 (MQ=255)

                                                     gCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGttt                                              >  2:158291/1‑99 (MQ=255)

                                                      ccATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCAGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                             <  2:550244‑M2/99‑47 (MQ=255)

                                                        aTACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAt                                           <  1:2965556/99‑1 (MQ=255)

                                                        aTACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAt                                           <  1:2428496/99‑1 (MQ=255)

                                                        aTACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAt                                           >  1:1323394/1‑99 (MQ=255)

                                                         tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAtt                                          >  1:2833768/1‑99 (MQ=255)

                                                         tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAtt                                          >  1:2075701/1‑99 (MQ=255)

                                                           cTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTa                                        <  1:1917537/99‑1 (MQ=255)

                                                             gtgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAAc                                      <  1:1202894/99‑1 (MQ=255)

                                                              tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACt                                     <  1:1104604/99‑1 (MQ=255)

                                                              tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACt                                     <  1:1779695/99‑1 (MQ=255)

                                                              tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACt                                     >  1:2874446/1‑99 (MQ=255)

                                                                  ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTAtt                                 <  1:1713381/99‑1 (MQ=255)

                                                                   tataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTg                                <  2:693440/99‑1 (MQ=255)

                                                                    ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGa                               <  1:327090/99‑1 (MQ=255)

                                                                       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGataa                            >  2:2858140/1‑99 (MQ=255)

                                                                        cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGataat                           <  2:28066/99‑1 (MQ=255)

                                                                          ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGAtaataa                         >  1:1430434/1‑99 (MQ=255)

                                                                          atcagtaagttggcagcatcaccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGAtaataa                         >  1:3041864‑M2/24‑99 (MQ=255)

                                                                           cAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATaaa                        <  1:2594874/99‑1 (MQ=255)

                                                                            aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAg                       >  2:2720135/1‑99 (MQ=255)

                                                                             gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGt                      <  2:1795772/99‑1 (MQ=255)

                                                                             gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGt                      >  1:1554720/1‑99 (MQ=255)

                                                                             gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGt                      >  1:91074/1‑99 (MQ=255)

                                                                              tAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGtt                     <  2:1014372/99‑1 (MQ=255)

                                                                                  gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTaaaa                 <  2:1778725/99‑1 (MQ=255)

                                                                                   ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTaaaaa                <  1:253836/99‑1 (MQ=255)

                                                                                    tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTaaaaaa               >  1:1666624/1‑99 (MQ=255)

                                                                                         gTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACaaa          <  2:1336071/99‑1 (MQ=255)

                                                                                         gTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACaaa          <  1:137955/99‑1 (MQ=255)

                                                                                          ttttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACaaat         >  2:1865730/1‑99 (MQ=255)

                                                                                            ttGCCGGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc       >  1:1977882‑M2/1‑15 (MQ=255)

                                                                                               ccGGATTATGGGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg    >  2:2108457‑M2/1‑12 (MQ=255)

                                                                                               ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAaataaata    >  2:606913‑M2/3‑99 (MQ=255)

                                                                                                cGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATAc   <  2:2261271‑M2/98‑1 (MQ=255)

                                                                                                cGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATAc   >  2:290538‑M2/2‑99 (MQ=255)

                                                                                                 ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACa  <  1:883061/99‑1 (MQ=255)

                                                                                                 ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACa  <  1:1242641/99‑1 (MQ=255)

GCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACA  >  NC_000913/4542480‑4542675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.