New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3653230NA (NA)5 (0.040) 5/176 NT 3.4% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 4541967 = 143 (1.200)intergenic (+408/‑70) fimB/fimE regulator for fimA/regulator for fimA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 162 total aligned reads displayed.

TGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGT  >  NC_000913/4541869‑4542063
                                                                                                  |                                                                                                
 cttgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGCCTGATAGACACATCTCTCCGTGTGTGGTTATCTTCTTATCTATTGGGCt                                                                                                 >  2:746105/2‑99 (MQ=255)
   tgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTaa                                                                                               <  2:2944199/99‑1 (MQ=255)
    gtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAt                                                                                              <  2:1940711/99‑1 (MQ=255)
    gtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAt                                                                                              >  1:1257296/1‑99 (MQ=255)
     tCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAtt                                                                                             >  1:504061/1‑99 (MQ=255)
        caTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                                          >  2:1943027/1‑99 (MQ=255)
        caTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                                          >  2:738538/1‑99 (MQ=255)
        caTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                                          >  2:2223666/1‑99 (MQ=255)
            aGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCg                                                                                      >  2:3026894/1‑99 (MQ=255)
             gTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGa                                                                                     >  2:1205950/1‑99 (MQ=255)
             gTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGa                                                                                     >  2:213753/1‑99 (MQ=255)
              tGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                                    <  1:2048524/99‑1 (MQ=255)
              tGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                                    >  1:2796353/1‑99 (MQ=255)
              tGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                                    >  2:2889358/1‑99 (MQ=255)
              tGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                                    >  1:623650/1‑99 (MQ=255)
                atatTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTg                                                                                  >  2:2906488/1‑99 (MQ=255)
                atatTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTg                                                                                  >  1:1170175/1‑99 (MQ=255)
                atatTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTg                                                                                  >  1:580468/1‑99 (MQ=255)
                 tattttatttTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGa                                                                                 >  1:1040849/1‑99 (MQ=255)
                 tattttatttTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGa                                                                                 <  2:1289017/99‑1 (MQ=255)
                   ttttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                               >  2:559895/1‑99 (MQ=255)
                    tttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGt                                                                              <  1:1539926/99‑1 (MQ=255)
                    tttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGt                                                                              <  2:2365759/99‑1 (MQ=255)
                      tattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGttt                                                                            >  1:1587373/1‑99 (MQ=255)
                       attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTc                                                                           <  1:1947316/99‑1 (MQ=255)
                         ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCt                                                                         >  1:1416413/1‑99 (MQ=255)
                         ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCt                                                                         <  2:1147124/99‑1 (MQ=255)
                         ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCt                                                                         <  2:700292/99‑1 (MQ=255)
                          tttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCta                                                                        >  1:404317/1‑99 (MQ=255)
                            tGTATGATATTTAATGTAATTGACTGATAGCCACCTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCtata                                                                      <  1:2742673/99‑1 (MQ=255)
                             gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAg                                                                     <  2:1012008/99‑1 (MQ=255)
                              tATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                    <  2:45047/99‑1 (MQ=255)
                                tGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTa                                                                  <  1:1560206/99‑1 (MQ=255)
                                 gATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTat                                                                 <  2:659258/99‑1 (MQ=255)
                                  atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTatt                                                                <  1:2583874/99‑1 (MQ=255)
                                  atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTatn                                                                <  1:1073889/99‑2 (MQ=255)
                                    atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattca                                                              <  2:3135651/99‑1 (MQ=255)
                                      ttAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcatt                                                            <  1:400557/99‑1 (MQ=255)
                                       tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcattc                                                           >  2:2708495/1‑99 (MQ=255)
                                       tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcattc                                                           <  1:785267/99‑1 (MQ=255)
                                          tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaaa                                                        >  1:184352/1‑99 (MQ=255)
                                          tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaaa                                                        >  2:2220692/1‑99 (MQ=255)
                                          tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaaa                                                        >  1:2335053/1‑99 (MQ=255)
                                          tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaaa                                                        >  1:2374410/1‑99 (MQ=255)
                                          tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaaa                                                        >  2:278289/1‑99 (MQ=255)
                                              aTTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatata                                                    <  2:815932/99‑1 (MQ=255)
                                               ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatatat                                                   >  1:788065/1‑99 (MQ=255)
                                                tGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                                  <  2:1310347/99‑1 (MQ=255)
                                                gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                                  >  1:2159277‑M2/51‑99 (MQ=255)
                                                  aCTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtctc                                                >  2:682870/1‑99 (MQ=255)
                                                   cTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCa                                               >  1:2675418/1‑99 (MQ=255)
                                                   cTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCa                                               >  1:2902514/1‑99 (MQ=255)
                                                    tGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAg                                              >  2:169750/1‑99 (MQ=255)
                                                     gATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGt                                             <  2:1417773/99‑1 (MQ=255)
                                                      aTAGCCACATTACGCCGTGTGTGGCTATTTCTAGATGTATTGGGCTAAGTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGtt                                            >  2:3094082/1‑99 (MQ=255)
                                                       tAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTa                                           >  2:716128/1‑99 (MQ=255)
                                                       tAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTa                                           >  1:2122510/1‑99 (MQ=255)
                                                         gCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                                         >  1:1371691/1‑99 (MQ=255)
                                                         gCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                                         >  2:224648/1‑99 (MQ=255)
                                                          ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                                        >  2:1104604/1‑99 (MQ=255)
                                                          ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                                        <  2:1486997/99‑1 (MQ=255)
                                                          ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                                        <  1:1453003/99‑1 (MQ=255)
                                                           cacaTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAg                                       >  1:273302/1‑99 (MQ=255)
                                                           caaacatgatctcatatcagggacttgttcgcaccttccCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAg                                       >  1:1383910‑M2/40‑99 (MQ=255)
                                                            acaTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGt                                      >  1:2480811/1‑99 (MQ=255)
                                                             caTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGta                                     >  1:945559/1‑99 (MQ=255)
                                                               tCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtact                                   >  1:1487838/1‑99 (MQ=255)
                                                               tCACTCCGTGTGTGGTTATCTTTTTACCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtact                                   >  1:1009033/1‑99 (MQ=255)
                                                                cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtacta                                  <  2:842328/99‑1 (MQ=255)
                                                                cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtacta                                  <  1:3054029/99‑1 (MQ=255)
                                                                   tCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                               <  2:1029551/99‑1 (MQ=255)
                                                                   atctcatatcagggacttgttcgcaccttccCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                               <  2:2151160‑M2/68‑1 (MQ=255)
                                                                     cGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTAtt                             >  2:363918/1‑99 (MQ=255)
                                                                      gtgtgtGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                            <  1:2087359/99‑1 (MQ=255)
                                                                         tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa                         >  2:791914/1‑99 (MQ=255)
                                                                         tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa                         >  2:610303/1‑99 (MQ=255)
                                                                          gtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg                        <  2:115907/99‑1 (MQ=255)
                                                                           tgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGt                       <  2:177741/99‑1 (MQ=255)
                                                                            ggTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTa                      >  2:1615992/1‑99 (MQ=255)
                                                                              ttATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTaaa                    <  1:2464749/99‑1 (MQ=255)
                                                                              ttATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTaaa                    >  1:2280444/1‑99 (MQ=255)
                                                                               tATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAc                   >  2:319088/1‑99 (MQ=255)
                                                                                aTCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcg                  <  1:1845561/99‑1 (MQ=255)
                                                                                 tCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgt                 >  1:3127380/1‑99 (MQ=255)
                                                                                    ttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt              <  1:2844082/99‑1 (MQ=255)
                                                                                    ttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt              <  2:387371/99‑1 (MQ=255)
                                                                                     tttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGtt             <  1:2544204/99‑1 (MQ=255)
                                                                                     tttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGtt             >  2:1257440/1‑99 (MQ=255)
                                                                                      ttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTa            <  1:2552067/99‑1 (MQ=255)
                                                                                      ttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTa            <  1:2346182/99‑1 (MQ=255)
                                                                                        aTCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATc          <  2:1507820/99‑1 (MQ=255)
                                                                                         tCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCt         <  1:879526/99‑1 (MQ=255)
                                                                                         tCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCt         >  2:2201965/1‑99 (MQ=255)
                                                                                          cTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCtt        >  1:2246508/1‑99 (MQ=255)
                                                                                          cTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCtt        <  2:2465418/99‑1 (MQ=255)
                                                                                           tATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTa       <  2:2798732/99‑1 (MQ=255)
                                                                                           tATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTa       >  2:2625177/1‑99 (MQ=255)
                                                                                            ccttccCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTAc      >  1:1866731‑M2/7‑99 (MQ=255)
                                                                                               gggCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCgg   <  2:314725/99‑1 (MQ=255)
                                                                                                ggCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGt  >  2:2305054/1‑99 (MQ=255)
                                                                                                  |                                                                                                
TGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGT  >  NC_000913/4541869‑4542063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.