| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,065 | IS1 (+) +8 bp | 8.2% | coding (29‑36/597 nt) | fimE → | regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 12 (0.090) | 12/176 | NT | 8.5% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542072 | 117 (0.920) | coding (36/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 9 (0.060) | 9/176 | NT | 6.5% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542065 = | 117 (0.920) | coding (29/597 nt) | fimE | regulator for fimA | |||||
ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583515‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACCTCAATCGGT < NC_000913/4542072‑4541976 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTAC < 2:3632666/99‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTA < 2:1796139/99‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAAT > 2:1246353/1‑99 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAG > 1:652090/1‑99 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATA < 1:3626557/99‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATAT > 2:1101354/1‑99 ACACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAA < 2:3635721/99‑1 ACTAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATG > 1:3558533/1‑99 TAAATCAGTAAGTTGGCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAA < 2:2434774/99‑1 GCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACC < 2:1880573/99‑1 GCAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACC > 2:3519313/1‑99 CAGCATCACCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACCT > 1:1427907/1‑99 CCAACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACCTCAATCGGT < 1:374894/99‑1 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583515‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTTTACCGGTAAGATAACGACGTTTACTCACAATAGTAGTACTCCTAACTGAGATATATTTGAATGAATACCTATAGGAAACCTCAATCGGT < NC_000913/4542072‑4541976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |