| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 86 (0.620) | 74 (0.590) | 54/158 | NT | 49.8% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 72 (0.570) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
Only 100 of 338 total aligned reads displayed.
GGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTA > NC_000913/4542584‑4542780 | gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:1618719‑M1/99‑1 (MQ=255) atttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:2693661‑M1/2‑1 (MQ=255) gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:260464‑M1/1‑99 (MQ=255) gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:1954927‑M1/99‑1 (MQ=255) gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 2:2867412‑M1/99‑1 (MQ=255) ttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 2:3576141‑M1/4‑1 (MQ=255) aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 2:1320211‑M1/1‑99 (MQ=255) ctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg > 2:2342940‑M1/94‑99 (MQ=255) agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGtg > 2:3267220‑M1/1‑97 (MQ=255) gaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 2:858442‑M1/1‑99 (MQ=255) gaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 2:1345848‑M1/1‑99 (MQ=255) aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACGAGACAATTGGGGCC < 2:1450734‑M1/99‑1 (MQ=255) cgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAAc > 1:2051466‑M1/88‑99 (MQ=255) atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Atttt < 2:3078657‑M1/99‑5 (MQ=255) atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Atttt > 2:3680288‑M1/1‑95 (MQ=255) ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGt > 2:2086592/1‑99 (MQ=255) catgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGt < 2:672374‑M1/15‑1 (MQ=255) atgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTc > 2:2001852‑M1/84‑99 (MQ=255) tgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTcc < 2:1083624‑M1/17‑1 (MQ=255) tAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactca > 2:1721399‑M1/1‑89 (MQ=255) tAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactca < 2:3341624‑M1/99‑11 (MQ=255) ggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCat < 1:1878563‑M1/19‑1 (MQ=255) aCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAACTGTCCatat < 2:2242163/99‑1 (MQ=255) gccgttctgtacactttgttttgtaaacgagtctgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCa > 1:3320594‑M1/77‑99 (MQ=255) cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCa > 1:1327765/1‑99 (MQ=255) aaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaa > 1:1003208‑M1/1‑80 (MQ=255) aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaag < 2:1416651‑M1/99‑21 (MQ=255) aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaag > 2:1040113‑M1/1‑79 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagca < 2:2053192‑M1/99‑23 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGtt > 2:1571684‑M1/67‑99 (MQ=255) aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGtt > 2:1762712/1‑99 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTa > 2:618338/1‑99 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACg > 1:22915/1‑99 (MQ=255) gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGt < 1:2128090/99‑1 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTa > 1:522897/1‑99 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTAttt > 1:1823226‑M1/59‑99 (MQ=255) agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaac < 1:2888798‑M1/99‑35 (MQ=255) agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:3552883/99‑1 (MQ=255) gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactt < 2:3454530‑M1/99‑37 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaacttt > 2:464146‑M1/1‑62 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 2:2718166/99‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 2:3549565/99‑1 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 1:1419213‑M1/54‑99 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttc < 2:3016870‑M1/99‑41 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 2:1853519‑M1/51‑99 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtt < 1:3425628‑M1/99‑45 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 1:835230‑M1/54‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 2:1375144/99‑1 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagttta > 2:1046969‑M1/1‑53 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 2:2458977‑M1/44‑99 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgcctcatagaggaaagcatcgcggacaaactttttcagtttatt > 2:1246639‑M1/1‑51 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatt < 1:1101269‑M1/99‑49 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:1911911/1‑99 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:1246639‑M1/58‑1 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:464146‑M1/58‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:1040278‑M1/1‑49 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 2:410609/1‑99 (MQ=255) gccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 2:3358397‑M1/39‑99 (MQ=255) gccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 2:1277078‑M1/39‑99 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:2816290‑M1/37‑99 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgg > 1:2167147‑M1/1‑45 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa < 1:309040/99‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa < 2:3150403/99‑1 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:3465785‑M1/1‑43 (MQ=255) ataaCGTTAAAAAAACAAATAACTACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt < 2:1223888‑M1/99‑58 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa < 1:1171838/99‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa > 2:2622122‑M1/33‑99 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:977860/99‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:3171621/99‑1 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg < 2:2503380/99‑1 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 2:2312290‑M1/99‑63 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa > 1:2964606‑M1/29‑99 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:1760906/99‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:3632759‑M1/99‑66 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct > 2:1835097‑M1/1‑34 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 2:507320/1‑99 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctatt < 2:2152748‑M1/99‑69 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa > 1:3013835/1‑99 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg < 2:1786061‑M1/99‑70 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgt > 2:3394724‑M1/1‑29 (MQ=255) cAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtta < 1:3509436‑M1/99‑73 (MQ=255) cccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc > 2:3375797‑M1/18‑99 (MQ=255) aaataaatACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc < 2:1486456/99‑1 (MQ=255) aataaataCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt < 2:2271976/99‑1 (MQ=255) aataaataCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt > 2:693017/1‑99 (MQ=255) taaataCAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctt > 1:2386370‑M1/1‑23 (MQ=255) aaataCAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatcttt > 1:763802‑M1/1‑22 (MQ=255) aaataCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAAc > 1:1271444/1‑99 (MQ=255) agatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTg > 1:153553‑M1/12‑99 (MQ=255) taCAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatt < 1:625732‑M1/99‑81 (MQ=255) tgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt > 1:2202164‑M1/9‑99 (MQ=255) aaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa > 2:888970‑M1/7‑99 (MQ=255) aCAATTGGGGCC‑Attttgactcatagaggaaaacatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttataga < 2:3412326‑M1/99‑87 (MQ=255) aCAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata < 2:2196677/99‑1 (MQ=255) aCAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata < 1:2415872/99‑1 (MQ=255) catTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat > 2:3183454‑M1/4‑99 (MQ=255) aTTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgt > 1:2515930‑M1/1‑10 (MQ=255) aTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGt > 2:2931725/1‑99 (MQ=255) ttGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtt < 1:38190‑M1/99‑91 (MQ=255) TTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTa < 1:2726403‑M1/99‑1 (MQ=255) | GGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTA > NC_000913/4542584‑4542780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |