| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 4,542,002 | IS1 (–) +9 bp | 13.2% | intergenic (+443/‑27) | fimB → / → fimE | regulator for fimA/regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 8 (0.090) | 8/176 | NT | 9.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542002 = | 69 (0.900) | intergenic (+443/‑35) | fimB/fimE | regulator for fimA/regulator for fimA | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 13 (0.150) | 13/176 | NT | 14.5% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542010 | 69 (0.900) | intergenic (+451/‑27) | fimB/fimE | regulator for fimA/regulator for fimA | |||||
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3584099‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACACACGGAGTGATGTGGCTA < NC_000913/4542010‑4541924 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAT < 1:245452/99‑1GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAT > 2:1439243/1‑99 CGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAA < 2:1656409/99‑1 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACC < 2:1768746/99‑1 AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGA < 2:900072/99‑1 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATA > 1:373395/1‑99 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATA < 2:272011/99‑1 TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAA > 1:1619205/1‑99 ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAA > 2:837593/1‑99 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAA < 1:1190118/99‑1 AAACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACA < 2:993823/99‑1 AACACTATCAATAAGTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACAC > 1:774468/1‑99 GTTGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACACACGGAGTGATGTGG > 2:2240831/1‑99 TGGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACACACGGAGTGATGTGGCT < 1:699064/99‑1 GGAGTCATTACCATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACACACGGAGTGATGTGGCTA < 1:963408/99‑1 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3584099‑3584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGAATGAATACCTATAGGAAACCTCAATCGGTCAAAATTAGCCCAATAGATAAAAAGATAACCACACACGGAGTGATGTGGCTA < NC_000913/4542010‑4541924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |