BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	3 (0.030)	3/176	NT	3.1%	noncoding (1/768 nt)	IS1	repeat region
*	?	NC_000913	4542087 =	95 (1.020)	3 (0.030)	3/176	NT	3.1%	coding (51/597 nt)	fimE	regulator for fimA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

CCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTA  >  NC_000913/4541990‑4542185

ctatcaataagttggagtcattaccCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAgg                                                                                                   <  2:152006‑M2/74‑1 (MQ=255)

  tataGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCg                                                                                                 <  1:1272586/99‑1 (MQ=255)

   ataGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCgg                                                                                                >  1:1113780/1‑99 (MQ=255)

    taGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGt                                                                                               >  2:1808331/1‑99 (MQ=255)

    taGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGt                                                                                               >  2:700520/1‑99 (MQ=255)

    taGATATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTCAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGt                                                                                               >  1:2288304/1‑99 (MQ=255)

     aGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGtt                                                                                              <  2:1887316/99‑1 (MQ=255)

      ggTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGttt                                                                                             >  2:1339733/1‑99 (MQ=255)

        tATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGt                                                                                           <  1:78787/99‑1 (MQ=255)

          ttcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTgggt                                                                                         <  2:1246301/99‑4 (MQ=255)

          ttcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTa                                                                                         <  1:942053/99‑1 (MQ=255)

            cattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACg                                                                                       >  1:1303921/1‑99 (MQ=255)

             ggagtcattaccCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACgg                                                                                      <  1:2043445‑M2/87‑1 (MQ=255)

              ttcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACggg                                                                                     <  2:1474801/99‑1 (MQ=255)

                 aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCa                                                                                  <  1:1430765/99‑1 (MQ=255)

                 aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCa                                                                                  >  1:815671/1‑99 (MQ=255)

                  aaTATATCTCAGTTAGGGATACTACTATTGTGAGTAAACGTCGTTATTTTACCGGCAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCaa                                                                                 <  2:111800/99‑1 (MQ=255)

                  aaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCaa                                                                                 >  1:1665093/1‑99 (MQ=255)

                  aaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCaa                                                                                 <  1:1598966/99‑1 (MQ=255)

                   atatatCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAc                                                                                >  2:2370467/1‑99 (MQ=255)

                   atatatCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAc                                                                                >  1:757237/1‑99 (MQ=255)

                    tatatCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACg                                                                               >  2:1218073/1‑99 (MQ=255)

                      accCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACggg                                                                             >  2:87181‑M2/4‑99 (MQ=255)

                       atCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGa                                                                            >  1:1863613/1‑99 (MQ=255)

                       atCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGa                                                                            <  1:1384193/99‑1 (MQ=255)

                         ctcAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGc                                                                          <  2:1830192/99‑1 (MQ=255)

                          tcAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGcc                                                                         >  2:1457861/1‑99 (MQ=255)

                           cAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCa                                                                        <  1:1421586/99‑1 (MQ=255)

                            aGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCag                                                                       >  2:320380/1‑99 (MQ=255)

                             gTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCaga                                                                      >  2:1317153/1‑99 (MQ=255)

                             gTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCaga                                                                      <  1:721339/99‑1 (MQ=255)

                              ttAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCagag                                                                     >  1:870488/1‑99 (MQ=255)

                               tAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAgaga                                                                    >  2:991147/1‑99 (MQ=255)

                                cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGat                                                                   <  2:842523‑M2/34‑1 (MQ=255)

                                aGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGat                                                                   <  2:1760573/99‑1 (MQ=255)

                                   aGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGattat                                                                >  1:1117643/1‑99 (MQ=255)

                                    gTACTACTATTGTCAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGattatt                                                               >  2:1655612/1‑99 (MQ=255)

                                     tactacTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTg                                                              >  1:48957/1‑99 (MQ=255)

                                     tactacTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTg                                                              <  2:2339196/99‑1 (MQ=255)

                                      cattatctgaacataaaacactatcaataagttggagtcattaccCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGt                                                             >  1:971342‑M2/46‑99 (MQ=255)

                                       ctactaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTc                                                            >  2:2209363/1‑99 (MQ=255)

                                         actaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCtt                                                          <  2:487654/99‑1 (MQ=255)

                                          ctaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTa                                                         >  2:2094892/1‑99 (MQ=255)

                                             ttGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTc                                                      >  2:390300/1‑99 (MQ=255)

                                               gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTg                                                    >  2:458825/1‑99 (MQ=255)

                                               gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTg                                                    <  2:1830818/99‑1 (MQ=255)

                                               gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTg                                                    <  2:1786419/99‑1 (MQ=255)

                                                acataaaacactatcaataagttggagtcattaccCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGt                                                   <  1:653682‑M2/64‑1 (MQ=255)

                                                  aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTg                                                 >  1:1044303/1‑99 (MQ=255)

                                                    caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGc                                               >  2:1180289‑M2/46‑99 (MQ=255)

                                                     aaacactatcaataagttggagtcattaccCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCa                                              <  1:971966‑M2/69‑1 (MQ=255)

                                                       aCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCata                                            >  1:1020621/1‑99 (MQ=255)

                                                       aCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCata                                            <  2:1120907/99‑1 (MQ=255)

                                                       aCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCata                                            >  1:2414214/1‑99 (MQ=255)

                                                        cgtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCatat                                           <  1:1580420/99‑1 (MQ=255)

                                                        cgtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCatat                                           <  1:1645451/99‑1 (MQ=255)

                                                        cgtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCatat                                           <  1:254864/99‑1 (MQ=255)

                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATc                                          >  1:611038/1‑99 (MQ=255)

                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATc                                          <  2:1467310/99‑1 (MQ=255)

                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATc                                          <  2:482223/99‑1 (MQ=255)

                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATc                                          <  2:1113780/99‑1 (MQ=255)

                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATc                                          >  2:377209/1‑99 (MQ=255)

                                                          tcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCg                                         >  1:846826/1‑99 (MQ=255)

                                                          tcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCg                                         <  2:967814/99‑1 (MQ=255)

                                                          tcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCg                                         >  1:908555/1‑99 (MQ=255)

                                                           cgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCgg                                        <  2:393847/99‑1 (MQ=255)

                                                               aTCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATg                                    >  2:442279/1‑99 (MQ=255)

                                                                tCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATgg                                   >  1:2350810/1‑99 (MQ=255)

                                                                ataagttggagtcattaccCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATgg                                   >  2:1888389‑M2/20‑99 (MQ=255)

                                                                  ttACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGa                                 >  1:2467351/1‑99 (MQ=255)

                                                                   tACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGAt                                <  1:2252284/99‑1 (MQ=255)

                                                                        gTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTa                           >  1:140517/1‑99 (MQ=255)

                                                                          gtcattaccCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAtt                         >  1:1992796‑M2/10‑99 (MQ=255)

                                                                           aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTa                        >  1:132454/1‑99 (MQ=255)

                                                                           aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTa                        >  1:1889457/1‑99 (MQ=255)

                                                                            agaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAg                       >  1:1528102/1‑99 (MQ=255)

                                                                             gaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGt                      <  1:2241251/99‑1 (MQ=255)

                                                                              aagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTg                     >  2:413410/1‑99 (MQ=255)

                                                                                  tCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACt                 <  1:2306596/99‑1 (MQ=255)

                                                                                  tCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACt                 <  2:2054779/99‑1 (MQ=255)

                                                                                   ttggcagcatcaccGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTg                >  1:2425316‑M2/15‑99 (MQ=255)

                                                                                   cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTg                <  2:1751098/99‑1 (MQ=255)

                                                                                   cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTg                >  2:1446078/1‑99 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              <  2:967638/99‑1 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              <  1:1695751/99‑1 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              <  2:1557938/99‑1 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              >  1:412304/1‑99 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              >  1:428411/1‑99 (MQ=255)

                                                                                     ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt              <  1:2094004/99‑1 (MQ=255)

                                                                                        cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa           >  2:1341922/1‑99 (MQ=255)

                                                                                        cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa           <  2:17183/99‑1 (MQ=255)

                                                                                        cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa           <  2:1940876/99‑1 (MQ=255)

                                                                                        cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa           <  2:451432/99‑1 (MQ=255)

                                                                                         atgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt          <  2:1211326/99‑1 (MQ=255)

                                                                                          tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc         <  2:2351816/99‑1 (MQ=255)

                                                                                          tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc         >  1:2343473/1‑99 (MQ=255)

                                                                                          tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc         <  2:2461382/99‑1 (MQ=255)

                                                                                               cAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTAATCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAt    <  2:1787986/99‑1 (MQ=255)

                                                                                                aGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAtt   <  2:363965/99‑1 (MQ=255)

                                                                                                 ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa  >  2:1901560/1‑99 (MQ=255)

CCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTA  >  NC_000913/4541990‑4542185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.