BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	9 (0.100)	9/176	NT	7.8%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	= 4542175	107 (1.150)	9 (0.100)	9/176	NT	7.8%	coding (139/597 nt)	fimE	regulator for fimA

Only 100 of 130 total aligned reads displayed.

CCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGAT  >  NC_000913/4542077‑4542270

ccATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTg                                                                                                 >  2:1794492/1‑99 (MQ=255)

 cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa                                                                                                <  2:17183/99‑1 (MQ=255)

 cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa                                                                                                <  2:1940876/99‑1 (MQ=255)

 cATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGa                                                                                                >  2:1341922/1‑99 (MQ=255)

  atgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt                                                                                               <  2:1211326/99‑1 (MQ=255)

   tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                              >  1:2343473/1‑99 (MQ=255)

   tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                              <  2:2461382/99‑1 (MQ=255)

      tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGc                                                                                           >  2:1159918/1‑99 (MQ=255)

         aGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAtt                                                                                        <  2:363965/99‑1 (MQ=255)

          ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                                                                                       >  2:1901560/1‑99 (MQ=255)

          ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                                                                                       <  2:1430399/99‑1 (MQ=255)

           gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                                      <  1:1283668/99‑1 (MQ=255)

           gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                                      <  2:1616/99‑1 (MQ=255)

           gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                                      >  1:96884/1‑99 (MQ=255)

            cGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATc                                                                                     <  1:2383337/99‑1 (MQ=255)

               tttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAgg                                                                                  >  2:483586/1‑99 (MQ=255)

                ttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGga                                                                                 <  2:604870/99‑1 (MQ=255)

                ttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGga                                                                                 <  2:860802/99‑1 (MQ=255)

                ttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGga                                                                                 <  2:1535794/99‑1 (MQ=255)

                   ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                              <  2:1243390/99‑1 (MQ=255)

                   ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                              <  2:1979806/99‑1 (MQ=255)

                   ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                              <  1:1842228/99‑1 (MQ=255)

                   ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                              <  2:864014/99‑1 (MQ=255)

                   ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                              >  2:1625608/1‑99 (MQ=255)

                    tACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacctt                                                                             <  1:2002703/99‑1 (MQ=255)

                      cGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga                                                                           >  1:1136470/1‑99 (MQ=255)

                       ggggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgac                                                                          >  1:2021638/1‑99 (MQ=255)

                        gggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacc                                                                         >  1:259743/1‑99 (MQ=255)

                         ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacct                                                                        >  2:2103823/1‑99 (MQ=255)

                         ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacct                                                                        <  1:1514917/99‑1 (MQ=255)

                         ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacct                                                                        <  1:798941/99‑1 (MQ=255)

                          gCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatat                                                                       <  2:900766‑M2/99‑27 (MQ=255)

                          gCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacctt                                                                       >  1:690733/1‑99 (MQ=255)

                            aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTaa                                                                     <  2:212943/99‑1 (MQ=255)

                            aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTaa                                                                     <  1:782113/99‑1 (MQ=255)

                             aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAAt                                                                    >  2:750961/1‑99 (MQ=255)

                             aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAAt                                                                    >  1:1028427/1‑99 (MQ=255)

                              cGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgaga                                                                   >  2:1770238‑M2/1‑69 (MQ=255)

                               gggAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGa                                                                  <  1:204486/99‑1 (MQ=255)

                                ggAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGaa                                                                 <  2:817923/99‑1 (MQ=255)

                                 gAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAg                                                                <  2:2305604/99‑1 (MQ=255)

                                  aGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAgg                                                               <  2:1809046/99‑1 (MQ=255)

                                    ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                             <  2:1090739/99‑1 (MQ=255)

                                    ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                             >  1:1846536/1‑99 (MQ=255)

                                    ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                             >  1:265234/1‑99 (MQ=255)

                                     cAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAg                                                            <  2:723184/99‑1 (MQ=255)

                                     cAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAg                                                            >  2:462940/1‑99 (MQ=255)

                                       gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                                          >  1:2420664/1‑99 (MQ=255)

                                         gaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaata                                                        >  2:2301520/1‑99 (MQ=255)

                                          attattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataa                                                       >  1:1875089/1‑99 (MQ=255)

                                          attattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataa                                                       >  1:1765332/1‑99 (MQ=255)

                                             attGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaata                                                    <  1:2278874/99‑1 (MQ=255)

                                               tGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATAtt                                                  <  2:461307/99‑1 (MQ=255)

                                                gTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGATCTTAATGAAGGTAGAATAAATATTc                                                 <  2:1272445/99‑1 (MQ=255)

                                                gTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTc                                                 >  1:2281337/1‑99 (MQ=255)

                                                 tCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCg                                                >  1:905338/1‑99 (MQ=255)

                                                   ttATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGcc                                              >  1:129707/1‑99 (MQ=255)

                                                   ttATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACCGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                              <  2:320269‑M2/99‑52 (MQ=255)

                                                     aTTCTGTTGGCATATCGGCCTGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGa                                            >  2:867423/1‑99 (MQ=255)

                                                     aTTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGa                                            >  2:1409124/1‑99 (MQ=255)

                                                      ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                           >  1:230352/1‑99 (MQ=255)

                                                       tCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACt                                          >  2:305411/1‑99 (MQ=255)

                                                         tGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa                                        >  1:813976‑M2/1‑42 (MQ=255)

                                                          gTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaa                                       <  2:1534562/99‑1 (MQ=255)

                                                           ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                      <  1:521428‑M2/99‑60 (MQ=255)

                                                           ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaag                                      >  2:41853/1‑99 (MQ=255)

                                                             ggCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaagaa                                    <  1:438075/99‑1 (MQ=255)

                                                              gCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                   <  2:1965385/99‑1 (MQ=255)

                                                              gCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                   >  1:671785/1‑99 (MQ=255)

                                                               cATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACg                                  >  2:958170/1‑99 (MQ=255)

                                                                  atCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAt                               >  2:1685424/1‑99 (MQ=255)

                                                                   tCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAtt                              >  1:1687283/1‑99 (MQ=255)

                                                                   tCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAtt                              <  2:334813/99‑1 (MQ=255)

                                                                   tCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAtt                              >  2:1925207/1‑99 (MQ=255)

                                                                      gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc                           >  2:219177/1‑99 (MQ=255)

                                                                        aTGGGATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                         >  1:1395577‑M2/1‑27 (MQ=255)

                                                                         tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCCTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                        >  2:1391979/1‑99 (MQ=255)

                                                                          gggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAcc                       <  2:1999630/99‑1 (MQ=255)

                                                                           ggATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                      <  1:2094093‑M2/99‑76 (MQ=255)

                                                                           ggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCg                      <  2:2467351/99‑1 (MQ=255)

                                                                            gATGCGTATTAGTGAACTGCTTGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                     >  1:397121‑M2/1‑23 (MQ=255)

                                                                             aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt                    <  2:920718/99‑1 (MQ=255)

                                                                              tGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc                   >  2:1196607/1‑99 (MQ=255)

                                                                              tGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc                   <  2:720333/99‑1 (MQ=255)

                                                                                cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAc                 >  2:1369414/1‑99 (MQ=255)

                                                                                  tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc               >  2:1622778/1‑99 (MQ=255)

                                                                                  tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc               >  2:1278283/1‑99 (MQ=255)

                                                                                    ttAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGt             >  2:628796/1‑99 (MQ=255)

                                                                                    ttAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGt             <  2:2027626/99‑1 (MQ=255)

                                                                                      aGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTa           <  1:1794334/99‑1 (MQ=255)

                                                                                       gTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAc          >  1:1423961/1‑99 (MQ=255)

                                                                                        tGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACg         >  1:1738380/1‑99 (MQ=255)

                                                                                        tGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACg         >  1:993512/1‑99 (MQ=255)

                                                                                          aaCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtt       >  1:1952256/1‑99 (MQ=255)

                                                                                          aaCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtt       >  2:220571/1‑99 (MQ=255)

                                                                                           aCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGttt      >  1:2363472/1‑99 (MQ=255)

                                                                                            cTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGtttt     >  2:813480/1‑99 (MQ=255)

                                                                                              gCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtga   <  2:1827742/99‑1 (MQ=255)

                                                                                              gCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtga   >  1:1414720/1‑99 (MQ=255)

                                                                                               cTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTtgat  >  2:232696/1‑99 (MQ=255)

CCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGAT  >  NC_000913/4542077‑4542270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.