mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.5% | 154.8 / 152.3 | 166 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,070,471 | 0 | A | G | 21.1% | 174.4 / 10.6 | 95 | intergenic (‑70/+44) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4171889 = | 3765 (33.330) | 7 (0.070) | 7/180 | 13.8 | 0.19% | intergenic (+133/‑168) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase |
| ? | NC_000913 | 4171910 = | 3779 (36.460) | intergenic (+154/‑147) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | 4040769 = | 13 (0.120) | 5 (0.050) | 5/180 | 15.2 | 0.26% | intergenic (+133/+137) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | 4171910 = | 3779 (36.460) | intergenic (+154/‑147) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | 70836 = | 18458 (163.380) | 4 (0.040) | 3/176 | 16.7 | 0.024% | coding (450/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | 70984 = | 16352 (161.370) | coding (598/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC | |||||