Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,397,381 Δ13,756 bp [ynaJ][ttcA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1397381 1411136 13756 136 [0] [0] 139 [ynaJ]–[ttcA] [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,[ttcA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13973800 (0.000)134 (0.980) 84/194 0.3 100% coding (16/258 nt) ynaJ DUF2534 domain‑containing protein YnaJ
?NC_000913 1411137 = 0 (0.000)coding (812/936 nt) ttcA tRNA cytosine(32) 2‑sulfurtransferase TtcA

Only 100 of 136 total aligned reads displayed.

GGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATA  >  NC_000913/1397282‑1397478
                                                                                                  |                                                                                                  
ggTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAAC                                                                                                    >  1:690599‑M1/1‑99 (MQ=255)
    ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACactt                                                                                                <  2:2170984‑M1/99‑5 (MQ=255)
     tCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttc                                                                                               <  2:284691‑M1/99‑6 (MQ=255)
      cAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttca                                                                                              <  1:176639‑M1/99‑7 (MQ=255)
        gagCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcaga                                                                                            >  1:70955‑M1/1‑91 (MQ=255)
         agCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaa                                                                                           <  1:2426072‑M1/99‑10 (MQ=255)
         agCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaa                                                                                           <  2:43816‑M1/99‑10 (MQ=255)
          gCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                          <  2:2936819‑M1/99‑11 (MQ=255)
            aGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccg                                                                                        <  1:784890‑M1/99‑13 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       >  2:1674392‑M1/1‑86 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       >  1:3274017‑M1/1‑86 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       >  2:630140‑M1/1‑86 (MQ=255)
              aCAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtg                                                                                      >  2:1874876‑M1/1‑85 (MQ=255)
               cAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgg                                                                                     <  2:3427800‑M1/99‑16 (MQ=255)
                aaCGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtggg                                                                                    <  2:2647649‑M1/99‑17 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgtgtga                                                                                 <  2:2046950‑M1/99‑20 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtga                                                                                 <  1:318546‑M1/99‑20 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtga                                                                                 <  1:630260‑M1/99‑20 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtga                                                                                 >  2:3573638‑M1/1‑80 (MQ=255)
                     tGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                               <  2:3348666‑M1/99‑22 (MQ=255)
                     tGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                               >  1:65371‑M1/1‑78 (MQ=255)
                        aaTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcct                                                                            <  2:3596619‑M1/99‑25 (MQ=255)
                         aTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctt                                                                           <  2:3578366‑M1/99‑26 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     <  1:2227762‑M1/99‑32 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  2:775054‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  1:244167‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     <  1:772780‑M1/99‑32 (MQ=255)
                                ggTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatc                                                                    <  1:3630818‑M1/99‑33 (MQ=255)
                                 gTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcg                                                                   >  1:1001396‑M1/1‑66 (MQ=255)
                                   aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                 <  1:3490653‑M1/99‑36 (MQ=255)
                                   aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                 <  2:894434‑M1/99‑36 (MQ=255)
                                     tGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaaca                                                               >  1:137793‑M1/1‑62 (MQ=255)
                                       ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacagg                                                             >  1:3504598‑M1/1‑60 (MQ=255)
                                       ttACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacagg                                                             >  1:2701124‑M1/1‑60 (MQ=255)
                                         aCGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggtt                                                           >  2:2695535‑M1/1‑58 (MQ=255)
                                          cGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttg                                                          >  1:800248‑M1/1‑57 (MQ=255)
                                          cGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttg                                                          <  2:1540067‑M1/99‑43 (MQ=255)
                                          cGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttg                                                          <  2:183009‑M1/99‑43 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       <  1:825099‑M1/99‑46 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       <  2:1159668‑M1/99‑46 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       <  1:321243‑M1/99‑46 (MQ=255)
                                              tAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtat                                                      <  1:2524013‑M1/99‑47 (MQ=255)
                                              tAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtat                                                      <  1:3255836‑M1/99‑47 (MQ=255)
                                              tAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtat                                                      <  1:1391114‑M1/99‑47 (MQ=255)
                                              tAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtat                                                      <  1:2616048‑M1/99‑47 (MQ=255)
                                                ggTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcg                                                    >  2:1977120‑M1/1‑51 (MQ=255)
                                                ggTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcg                                                    >  2:3581463‑M1/1‑51 (MQ=255)
                                                  tAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgca                                                  <  2:1020331‑M1/99‑51 (MQ=255)
                                                    aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                >  2:2710624‑M1/1‑47 (MQ=255)
                                                    aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                >  2:135182‑M1/1‑47 (MQ=255)
                                                     cAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacag                                               >  2:15144‑M1/1‑46 (MQ=255)
                                                      aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacaga                                              >  2:175315‑M1/1‑45 (MQ=255)
                                                       aGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagat                                             <  2:234196‑M1/99‑56 (MQ=255)
                                                        gAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatg                                            >  2:1302084‑M1/1‑43 (MQ=255)
                                                        gAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatg                                            >  1:2811234‑M1/1‑43 (MQ=255)
                                                        gAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatg                                            >  2:3409687‑M1/1‑43 (MQ=255)
                                                         aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgc                                           >  2:570900‑M1/1‑42 (MQ=255)
                                                         aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgc                                           <  1:592109‑M1/99‑58 (MQ=255)
                                                          aaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcg                                          >  2:2088520‑M1/1‑41 (MQ=255)
                                                          aaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcg                                          >  1:2451853‑M1/1‑41 (MQ=255)
                                                          aaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcg                                          >  2:573355‑M1/1‑41 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         >  1:2338474‑M1/1‑40 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         <  2:3393494‑M1/99‑60 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         >  1:1354938‑M1/1‑40 (MQ=255)
                                                            tttGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgac                                        >  2:2537728‑M1/1‑39 (MQ=255)
                                                               gTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggc                                     <  2:1571534‑M1/99‑64 (MQ=255)
                                                                tCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggca                                    <  2:55394‑M1/99‑65 (MQ=255)
                                                                   gCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacca                                 <  1:3301907‑M1/99‑68 (MQ=255)
                                                                   gCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacca                                 >  1:2252926‑M1/1‑32 (MQ=255)
                                                                    cacaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccac                                >  2:1733026‑M1/1‑31 (MQ=255)
                                                                    cacaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccac                                >  2:2567583‑M1/1‑31 (MQ=255)
                                                                     acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccaca                               >  2:702003‑M1/1‑30 (MQ=255)
                                                                     acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccaca                               <  2:2993463‑M1/99‑70 (MQ=255)
                                                                      caAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacat                              >  1:3194505‑M1/1‑29 (MQ=255)
                                                                       aaGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacatt                             <  2:3298492‑M1/99‑72 (MQ=255)
                                                                        aGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                            >  2:2279378‑M1/1‑27 (MQ=255)
                                                                        aGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                            >  2:3646531‑M1/1‑27 (MQ=255)
                                                                        aGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                            <  1:3093687‑M1/99‑73 (MQ=255)
                                                                          gATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctg                          >  1:13321‑M1/1‑25 (MQ=255)
                                                                           aTTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgc                         >  1:2876923‑M1/1‑24 (MQ=255)
                                                                            ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgca                        <  1:2851608‑M1/99‑77 (MQ=255)
                                                                              aCATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatc                      <  1:2168633‑M1/99‑79 (MQ=255)
                                                                                  catGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgc                  <  1:1482375‑M1/99‑83 (MQ=255)
                                                                                     gATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctga               >  2:2318567‑M1/1‑14 (MQ=255)
                                                                                      aTTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaa              >  1:1700567‑M1/1‑13 (MQ=255)
                                                                                       ttATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaac             >  2:404338‑M1/1‑12 (MQ=255)
                                                                                        tATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttcgtatcgcacagatgcgacggcaccaaattctgcatcgcgctgaaca            <  2:381247‑M1/99‑89 (MQ=255)
                                                                                         aTGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacat           <  2:69019‑M1/99‑90 (MQ=255)
                                                                                          tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc          >  1:1777018‑M1/1‑9 (MQ=255)
                                                                                          tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc          >  2:1000495‑M1/1‑9 (MQ=255)
                                                                                          tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc          >  2:3086313‑M1/1‑9 (MQ=255)
                                                                                           ggCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcg         <  1:1218883‑M1/99‑92 (MQ=255)
                                                                                            gCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgt        <  1:3788765‑M1/99‑93 (MQ=255)
                                                                                             cGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc       >  1:2196961‑M1/1‑6 (MQ=255)
                                                                                             cGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc       <  1:1030993‑M1/99‑94 (MQ=255)
                                                                                              gAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtct      <  1:3108744‑M1/99‑95 (MQ=255)
                                                                                              gAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtct      <  1:3386855‑M1/99‑95 (MQ=255)
                                                                                              gAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtct      <  1:1113341‑M1/99‑95 (MQ=255)
                                                                                                 acacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcga   <  2:2343033‑M1/99‑98 (MQ=255)
                                                                                                  cacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgat  <  2:2192214‑M1/99‑99 (MQ=255)
                                                                                                  |                                                                                                  
GGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATA  >  NC_000913/1397282‑1397478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: