Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423678–3424234	3424614–3424238	5–937	62 [60]	[60] 66	[rrfD]–[rrlD]	[rrfD],[rrlD]

CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGT  >  NC_000913/3424556‑3424713                                                            |                                                                                                     cTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTaa                                                               <  2:1187007/99‑1 (MQ=33)  tGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAg                                                              <  1:335854/99‑1 (MQ=33)  tGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAg                                                              <  2:1885046/99‑1 (MQ=33)    tCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGcc                                                            >  1:1173094/1‑99 (MQ=34)    tCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGcc                                                            <  2:378459/99‑1 (MQ=34)    tCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGcc                                                            >  1:953537/1‑99 (MQ=34)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAc                                                      <  2:1199727/99‑1 (MQ=33)            ccGGATTACGGGTCAACGTTAGAACATCAAACGTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑t                                                   <  2:2629039/99‑1 (MQ=21)              ggATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑t                                                <  2:2381919/99‑1 (MQ=34)              ggATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑t                                                <  2:2491295/99‑1 (MQ=34)               gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑Tc                                               >  2:241875/1‑99 (MQ=34)               gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑Tc                                               >  1:2073885/1‑99 (MQ=34)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑Tcc                                              <  2:2427359/99‑1 (MQ=33)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑Tcc                                              >  1:1586254/1‑99 (MQ=34)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑Tcc                                              <  1:720627/99‑1 (MQ=34)                 ttACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCt                                             >  1:1723877/1‑99 (MQ=34)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTa                                            <  2:1638067/99‑1 (MQ=34)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTa                                            <  1:154536/99‑1 (MQ=34)                   aCGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTac                                           <  1:2194569/99‑1 (MQ=34)                      ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTAcaca                                        <  2:2819745/99‑1 (MQ=33)                      ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTAcaca                                        <  2:1092608/99‑1 (MQ=34)                      ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTAcaca                                        <  1:551468/99‑1 (MQ=34)                       gTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACAt                                       <  2:236050/99‑1 (MQ=33)                          aaCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCaa                                    <  1:756374/99‑1 (MQ=34)                          aaCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCaa                                    <  2:2836827/99‑1 (MQ=33)                            cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAgg                                  >  2:2391254/1‑99 (MQ=34)                              ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCTACACTTCTAGGCCTCCCCCC‑TA‑ATCTACACATCAAGGCt                                <  2:2076781/99‑1 (MQ=11)                              ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCt                                <  2:2520873/99‑1 (MQ=34)                              ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCt                                >  1:2030792/1‑99 (MQ=34)                              ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑ACCTACACATCAAGGCt                                <  2:1271509/99‑1 (MQ=18)                               tAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTc                               <  1:2657157/99‑1 (MQ=34)                                 gAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCaa                             >  2:1085608/1‑99 (MQ=34)                                 gAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCaa                             >  1:1413909/1‑99 (MQ=34)                                  aaCATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAAt                            >  1:1903099/1‑99 (MQ=34)                                    cATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGTGTCCACACGT‑TACGGCGACCCCC‑GAGACCTACACATCAAGGCTCAATGt                          <  2:1418555/99‑1 (MQ=1)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAg                      >  1:1365313/1‑99 (MQ=33)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgt                     <  2:2774084/99‑1 (MQ=34)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgt                     >  2:49370/1‑99 (MQ=34)                                          aCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtg                    >  2:740396/1‑99 (MQ=34)                                          aCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtg                    >  1:1096671/1‑99 (MQ=34)                                          aCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtg                    <  2:1111487/99‑1 (MQ=34)                                           cATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTTTTTTTTTAACTT‑TACGGCCACCACCGTG‑ATCTACACATCAAGGCTCAATGTTCAgtgt                   <  2:1770579/99‑1 (MQ=0)                                           cATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtgt                   <  2:2219830/99‑1 (MQ=34)                                           cATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtgt                   >  2:1742605/1‑99 (MQ=34)                                           cATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAgtgt                   <  2:1937346/99‑1 (MQ=33)                                            aTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTc                  <  2:1589497/99‑1 (MQ=34)                                              tAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCaa                >  1:1054238/1‑99 (MQ=34)                                              tAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCaa                <  2:1570364/99‑1 (MQ=34)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAg               >  1:1676126/1‑99 (MQ=33)                                                aaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc              <  2:1936916/99‑1 (MQ=34)                                                aaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc              >  1:1489611/1‑99 (MQ=34)                                                aaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc              >  1:1951832/1‑99 (MQ=34)                                                aaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc              <  1:2180170/99‑1 (MQ=34)                                                   ggtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtat           <  1:2395628/99‑1 (MQ=34)                                                    gtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata          >  1:426206/1‑99 (MQ=34)                                                    gtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata          <  1:2820836/99‑1 (MQ=33)                                                      ggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGt        >  1:96023/1‑99 (MQ=34)                                                       gtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTa       >  1:409567/1‑99 (MQ=34)                                                       gtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTa       >  1:2527859/1‑99 (MQ=34)                                                         aTTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTaaa     >  2:1509628/1‑99 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  <  1:24321/99‑1 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  <  1:2578431/99‑1 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  <  1:1532758/99‑1 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  >  2:291886/1‑99 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  <  2:1458531/99‑1 (MQ=34)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt  <  1:70663/99‑1 (MQ=34)                                                            |                                                                                                     CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGT  >  NC_000913/3424556‑3424713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑