mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.2% | 151.7 / 29.7 | 84 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 58 (0.690) | 20 (0.290) | 18/164 | 4.6 | 28.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 53 (0.760) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 66 (0.790) | 17 (0.240) | 16/164 | 5.2 | 24.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 50 (0.720) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4171889 = | 5025 (60.170) | 8 (0.100) | 8/180 | 9.3 | 0.17% | intergenic (+133/‑168) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase |
| ? | NC_000913 | 4171910 = | 5035 (65.710) | intergenic (+154/‑147) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | 4040782 = | 28 (0.340) | 7 (0.090) | 7/180 | 9.8 | 0.28% | intergenic (+146/+124) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | 4171897 = | 5025 (65.580) | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | 70646 = | 25696 (307.700) | 7 (0.090) | 6/188 | 10.8 | 0.029% | coding (260/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | 70694 = | 24309 (303.610) | coding (308/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC | |||||
| * | ? | NC_000913 | 4040769 = | 15 (0.180) | 5 (0.070) | 5/180 | 11.1 | 0.20% | intergenic (+133/+137) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | 4171910 = | 5035 (65.710) | intergenic (+154/‑147) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | = 1209618 | 69 (0.830) | 5 (0.070) | 4/166 | 11.1 | 7.2% | pseudogene (38/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment |
| ? | NC_000913 | 2471897 = | 70 (0.990) | pseudogene (166/519 nt) | yfdL | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL | |||||
| * | ? | NC_000913 | 4040769 = | 15 (0.180) | 4 (0.050) | 4/180 | 11.8 | 16.1% | intergenic (+133/+137) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | 4040790 = | 28 (0.370) | intergenic (+154/+116) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||