mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 366,521 | 0 | C | T | 50.3% | 2.9 / 268.0 | 175 | L330L (CTG→CTA) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.1% | 250.0 / 91.7 | 137 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,070,450 | 0 | T | C | 22.4% | 213.2 / 13.9 | 100 | intergenic (‑49/+65) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 88 (0.840) | 21 (0.240) | 19/164 | 7.2 | 21.2% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 83 (0.950) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 97 (0.930) | 10 (0.110) | 10/164 | 11.1 | 10.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 83 (0.950) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||