Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,397,381 Δ13,756 bp 100% [ynaJ][ttcA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1397381 1411136 13756 109 [0] [0] 112 [ynaJ]–[ttcA] [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,[ttcA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13973800 (0.000)96 (0.910) 64/174 NT 100% coding (16/258 nt) ynaJ DUF2534 domain‑containing protein YnaJ
?NC_000913 1411137 = 0 (0.000)coding (812/936 nt) ttcA tRNA cytosine(32) 2‑sulfurtransferase TtcA

Only 100 of 109 total aligned reads displayed.

GGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATA  >  NC_000913/1397282‑1397478
                                                                                                  |                                                                                                  
 gTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACa                                                                                                   >  1:1979675‑M1/1‑98 (MQ=255)
  ttttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACac                                                                                                  >  1:1252846‑M1/1‑97 (MQ=255)
    ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACactt                                                                                                <  1:268275‑M1/99‑5 (MQ=255)
    ttCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACactt                                                                                                <  1:2606370‑M1/99‑5 (MQ=255)
     tCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttc                                                                                               <  2:2328628‑M1/99‑6 (MQ=255)
     tCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttc                                                                                               >  2:1045069‑M1/1‑94 (MQ=255)
        gagCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcaga                                                                                            >  1:2802607‑M1/1‑91 (MQ=255)
        gagCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcaga                                                                                            >  2:2300239‑M1/1‑91 (MQ=255)
          gCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                          >  2:1297041‑M1/1‑89 (MQ=255)
          gCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                          >  2:2388480‑M1/1‑89 (MQ=255)
          gCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaac                                                                                          <  2:563599‑M1/99‑11 (MQ=255)
           cAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaacc                                                                                         <  1:648598‑M1/99‑12 (MQ=255)
            aGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccg                                                                                        <  2:347512‑M1/99‑13 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       >  2:2530558‑M1/1‑86 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       >  2:1366919‑M1/1‑86 (MQ=255)
             gACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgt                                                                                       <  2:374570‑M1/99‑14 (MQ=255)
              aCAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtg                                                                                      >  1:2238952‑M1/1‑85 (MQ=255)
                aaCGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtggg                                                                                    <  1:2894985‑M1/99‑17 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtga                                                                                 <  2:1709352‑M1/99‑20 (MQ=255)
                   ggTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtga                                                                                 <  1:3156644‑M1/99‑20 (MQ=255)
                    gTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgat                                                                                <  2:3022268‑M1/99‑21 (MQ=255)
                     tGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                               >  1:1732713‑M1/1‑78 (MQ=255)
                     tGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTACACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatg                                                                               >  1:2367196‑M1/1‑78 (MQ=255)
                        aaTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcct                                                                            >  2:3218016‑M1/1‑75 (MQ=255)
                        aaTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcct                                                                            <  2:3382573‑M1/99‑25 (MQ=255)
                        aaTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcct                                                                            <  1:1961791‑M1/99‑25 (MQ=255)
                         aTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctt                                                                           >  1:2436671‑M1/1‑74 (MQ=255)
                         aTGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctt                                                                           >  1:1127900‑M1/1‑74 (MQ=255)
                            tCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttga                                                                        >  2:1720566‑M1/1‑71 (MQ=255)
                            tCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttga                                                                        >  1:1242311‑M1/1‑71 (MQ=255)
                            tCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttga                                                                        >  2:2696122‑M1/1‑71 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  1:767083‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  2:3013580‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  1:1093729‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  2:758093‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     >  1:1489605‑M1/1‑68 (MQ=255)
                               tGGTATTGTTACGTTTACGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaat                                                                     <  2:1164163‑M1/99‑32 (MQ=255)
                                  tATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcga                                                                  <  2:75845‑M1/99‑35 (MQ=255)
                                   aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                 <  2:3063185‑M1/99‑36 (MQ=255)
                                   aTTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaa                                                                 <  2:3195431‑M1/99‑36 (MQ=255)
                                    ttGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaac                                                                >  1:784644‑M1/1‑63 (MQ=255)
                                     tGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaaca                                                               <  1:464924‑M1/99‑38 (MQ=255)
                                      gTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacag                                                              >  1:2148570‑M1/1‑61 (MQ=255)
                                        tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                            <  1:527350‑M1/99‑41 (MQ=255)
                                        tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                            <  2:2309200‑M1/99‑41 (MQ=255)
                                        tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                            >  2:1024917‑M1/1‑59 (MQ=255)
                                        tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                            >  1:1135292‑M1/1‑59 (MQ=255)
                                        tACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggt                                                            <  2:234131‑M1/99‑41 (MQ=255)
                                           gTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttgg                                                         >  1:1698049‑M1/1‑56 (MQ=255)
                                           gTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttgg                                                         >  1:1372902‑M1/1‑56 (MQ=255)
                                            tttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggt                                                        >  2:1948980‑M1/1‑55 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       >  1:1447314‑M1/1‑54 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       <  1:922861‑M1/99‑46 (MQ=255)
                                             ttAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggta                                                       <  1:508300‑M1/99‑46 (MQ=255)
                                                ggTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggctggtatcg                                                    >  2:2494212‑M1/1‑51 (MQ=255)
                                                 gTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgc                                                   >  2:858030‑M1/1‑50 (MQ=255)
                                                 gTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgc                                                   >  2:1061178‑M1/1‑50 (MQ=255)
                                                  tAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgca                                                  <  2:2623540‑M1/99‑51 (MQ=255)
                                                   aaCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcac                                                 >  1:623228‑M1/1‑48 (MQ=255)
                                                    aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                >  1:2262915‑M1/1‑47 (MQ=255)
                                                    aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                >  1:2619472‑M1/1‑47 (MQ=255)
                                                    aCAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcaca                                                >  1:936147‑M1/1‑47 (MQ=255)
                                                      aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacaga                                              <  1:2468643‑M1/99‑55 (MQ=255)
                                                      aaGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacaga                                              <  1:884763‑M1/99‑55 (MQ=255)
                                                       aGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagat                                             >  1:1581074‑M1/1‑44 (MQ=255)
                                                        gAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatg                                            >  1:853857‑M1/1‑43 (MQ=255)
                                                         aaaTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgc                                           >  1:2770018‑M1/1‑42 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         <  2:3203477‑M1/99‑60 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         >  2:1655044‑M1/1‑40 (MQ=255)
                                                           aTTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcga                                         >  1:2631979‑M1/1‑40 (MQ=255)
                                                                  tGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacc                                  >  2:1290167‑M1/1‑33 (MQ=255)
                                                                  tGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacc                                  >  2:2946517‑M1/1‑33 (MQ=255)
                                                                  tGCACAAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcacc                                  >  2:209959‑M1/1‑33 (MQ=255)
                                                                     acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccaca                               >  2:3363794‑M1/1‑30 (MQ=255)
                                                                     acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccaca                               <  1:2260012‑M1/99‑70 (MQ=255)
                                                                     acaAGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccaca                               <  2:1171904‑M1/99‑70 (MQ=255)
                                                                        aGGATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattc                            <  1:473233‑M1/99‑73 (MQ=255)
                                                                          gATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctg                          <  1:3310810‑M1/99‑75 (MQ=255)
                                                                          gATTACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctg                          >  2:3214525‑M1/1‑25 (MQ=255)
                                                                            ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgca                        <  2:701779‑M1/99‑77 (MQ=255)
                                                                            ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgca                        <  2:2864645‑M1/99‑77 (MQ=255)
                                                                            ttACATCATGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgca                        >  2:1380725‑M1/1‑23 (MQ=255)
                                                                                atcatGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgc                    >  1:2804893‑M1/1‑19 (MQ=255)
                                                                                atcatGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgc                    <  2:302249‑M1/99‑81 (MQ=255)
                                                                                   atGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgct                 <  2:1091063‑M1/99‑84 (MQ=255)
                                                                                   atGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgct                 >  2:2734591‑M1/1‑16 (MQ=255)
                                                                                   atGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgct                 <  1:2038141‑M1/99‑84 (MQ=255)
                                                                                    tGATTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctg                >  2:540260‑M1/1‑15 (MQ=255)
                                                                                      aTTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaa              >  2:1148501‑M1/1‑13 (MQ=255)
                                                                                      aTTATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaa              <  1:1595869‑M1/99‑87 (MQ=255)
                                                                                       ttATGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaac             >  1:1047767‑M1/1‑12 (MQ=255)
                                                                                          tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc          <  1:1036216‑M1/99‑91 (MQ=255)
                                                                                          tGGCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatc          <  2:2953946‑M1/99‑91 (MQ=255)
                                                                                            gCGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgt        <  2:826616‑M1/99‑93 (MQ=255)
                                                                                             cGAAACacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtc       >  1:1193870‑M1/1‑6 (MQ=255)
                                                                                               aaaCacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctc     <  1:3117867‑M1/99‑96 (MQ=255)
                                                                                               aaaCacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctc     >  2:1740273‑M1/1‑4 (MQ=255)
                                                                                               aaaCacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctc     <  2:3097849‑M1/99‑96 (MQ=255)
                                                                                                 acacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcga   >  2:1229056‑M1/1‑2 (MQ=255)
                                                                                                  cacttcagaaccgtgggtgatgcctttgaaatcgaacaggttggtatcgcacagatgcgacggcaccacattctgcatcgcgctgaacatcgtctcgat  <  1:1412934‑M1/99‑99 (MQ=255)
                                                                                                  |                                                                                                  
GGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATA  >  NC_000913/1397282‑1397478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: