| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,535,511 | T→G | 100% | T120P (ACG→CCG) | envZ ← | sensory histidine kinase EnvZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,535,511 | 0 | T | G | 100.0% | 245.9 / ‑6.7 | 66 | T120P (ACG→CCG) | envZ | sensory histidine kinase EnvZ |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (22/43); total (22/44) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTA > NC_000913/3535417‑3535604 | tCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCggg < 1:1185773/99‑1 (MQ=255) aGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGccc > 1:571113/1‑99 (MQ=255) cGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAg < 2:1683895/99‑1 (MQ=255) ggCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGt < 1:1352384/99‑1 (MQ=255) ggCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGt < 1:706111/99‑1 (MQ=255) gCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGtt > 1:323314/1‑99 (MQ=255) gCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGtt < 1:918191/99‑1 (MQ=255) aCGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTtgc < 2:1767245/99‑1 (MQ=255) gcgTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTtgctg < 2:1259912/99‑1 (MQ=255) gcgTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTtgctg < 2:1092740/99‑1 (MQ=255) tACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTgcgc > 1:194067/1‑99 (MQ=255) cccAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCa > 1:1959067/1‑99 (MQ=255) cccAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCa < 1:762178/99‑1 (MQ=255) cccAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCa < 1:1335867/99‑1 (MQ=255) cccAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCa < 2:784332/99‑1 (MQ=255) ccAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCAt < 1:94611/99‑1 (MQ=255) aGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCt > 1:1806179/1‑99 (MQ=255) gATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTg > 1:206402/1‑99 (MQ=255) gATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTg < 2:1298302/99‑1 (MQ=255) atatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGa < 2:1520992/99‑1 (MQ=255) atatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGa < 2:398573/99‑1 (MQ=255) tatTGGGCGACCGCCAGGTTTTCAGCCAGACGACAGGCGAGCTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGAt < 2:1909006/99‑1 (MQ=255) tatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGAt > 1:1788163/1‑99 (MQ=255) tatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGAt < 1:1107392/99‑1 (MQ=255) tatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGAt < 2:1208095/99‑1 (MQ=255) tatTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGAt < 1:646869/99‑1 (MQ=255) atTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATg < 1:1343715/99‑1 (MQ=255) gggCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCt < 1:1390747/99‑1 (MQ=255) cAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGaa > 1:254773/1‑99 (MQ=255) ccAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTc < 1:1268995/99‑1 (MQ=255) ggTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATa > 2:1932688/1‑99 (MQ=255) gTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAg > 2:1866073/1‑99 (MQ=255) ttCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAgtgt < 1:1506917/99‑1 (MQ=255) cAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGcc > 2:725508/1‑99 (MQ=255) aGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGccc < 2:457201/99‑1 (MQ=255) gacgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCa > 1:1159620/1‑99 (MQ=255) acgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa < 2:1721778/99‑1 (MQ=255) acgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa < 1:1400538/99‑1 (MQ=255) acgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa > 1:1702181/1‑99 (MQ=255) cgacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAAc > 2:1648328/1‑99 (MQ=255) gacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACg > 2:154730/1‑99 (MQ=255) acAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGc > 2:574223/1‑99 (MQ=255) acAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGc > 2:964435/1‑99 (MQ=255) cAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCa > 1:730996/1‑99 (MQ=255) cAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCa < 1:1596677/99‑1 (MQ=255) ggCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGa < 1:876399/99‑1 (MQ=255) gCGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGAc > 1:918006/1‑99 (MQ=255) cGAGCTTTTTTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTGTCGCCCAACGCAGAca < 2:1818553/99‑2 (MQ=255) cGAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGAcc < 1:594495/99‑1 (MQ=255) gAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCt < 2:741214/99‑1 (MQ=255) gAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCt < 2:1636837/99‑1 (MQ=255) gAACTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCt < 2:1781756/99‑1 (MQ=255) aaCTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTg > 2:552023/1‑99 (MQ=255) aCTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGc > 1:1229988/1‑99 (MQ=255) cTTTTGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGcc > 2:1347724/1‑99 (MQ=255) ttttGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCct < 1:1814737/99‑1 (MQ=255) tttGTTGACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCctc < 1:555133/99‑1 (MQ=255) ttgttgACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCctct < 1:1568612/99‑1 (MQ=255) tgttgACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCtt < 1:1200394/99‑1 (MQ=255) gttgACCTCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTc < 2:615474/99‑1 (MQ=255) tCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGcc < 1:1738155/99‑1 (MQ=255) tCAACGCGCACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGcc < 2:1197122/99‑1 (MQ=255) cgcACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTg < 2:1746684/99‑1 (MQ=255) cACTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGa < 1:1260232/99‑1 (MQ=255) aCTTCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAg < 2:1533701/99‑1 (MQ=255) ttCCGGCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTa < 1:1028993/99‑1 (MQ=255) | TCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTA > NC_000913/3535417‑3535604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |