mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 366,521 | 0 | C | T | 50.2% | 9.2 / 305.1 | 201 | L330L (CTG→CTA) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.1% | 224.3 / 139.0 | 156 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,781,152 | 0 | A | G | 24.1% | 120.2 / 11.2 | 55 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| * | NC_000913 | 3,608,703 | 0 | A | G | 23.8% | 175.2 / 14.5 | 85 | intergenic (+54/+48) | zntA/tusA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase/sulfur transfer protein TusA |
| * | NC_000913 | 3,608,696 | 0 | T | G | 22.5% | 234.7 / 18.6 | 90 | intergenic (+47/+55) | zntA/tusA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase/sulfur transfer protein TusA |
| * | NC_000913 | 3,608,713 | 0 | T | G | 22.2% | 210.7 / 13.7 | 90 | intergenic (+64/+38) | zntA/tusA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase/sulfur transfer protein TusA |
| * | NC_000913 | 3,781,150 | 0 | T | G | 21.4% | 143.7 / 16.6 | 56 | intergenic (+133/‑65) | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| * | NC_000913 | 4,070,450 | 0 | T | C | 20.3% | 281.2 / 10.1 | 113 | intergenic (‑49/+65) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 137 (1.260) | 24 (0.240) | 21/178 | 7.9 | 16.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 116 (1.170) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4542682 = | 140 (1.280) | 16 (0.160) | 15/178 | 10.3 | 11.5% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 119 (1.200) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||