| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 986,443 | IS1 (–) +9 bp | 34.9% | coding (532‑540/1089 nt) | ompF ← | outer membrane porin F |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 28 (0.310) | 24/170 | NT | 31.2% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 986443 = | 55 (0.690) | coding (540/1089 nt) | ompF | outer membrane porin F | |||||
| * | ? | NC_000913 | = 986451 | 55 (0.670) | 31 (0.340) | 28/176 | NT | 33.6% | coding (532/1089 nt) | ompF | outer membrane porin F |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
CCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/986366‑986451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT < NC_000913/1050545‑1050451 CCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCA > 1:1713065/1‑99CCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCA > 1:394008/1‑99 TATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTAT < 1:1345383/99‑1 TATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTAT > 1:260325/1‑99 TTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTG > 1:1646342/1‑99 TAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAG > 2:408880/1‑99 GCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTG < 1:1767835/99‑1 ATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTT > 1:1263782/1‑99 GAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATG > 1:514521/1‑99 AACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < 2:2234490/99‑1 ACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT < 1:1511314/99‑1 ACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT < 1:1123902/99‑1 CGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC > 1:562973/1‑99 CGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC < 2:148296/99‑1 TCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG > 2:191024/1‑99 CGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA > 1:851736/1‑99 TTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACT > 1:928045/1‑99 TAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT < 1:1530278/99‑1 GAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG > 2:975904/1‑99 AACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT < 1:819105/99‑1 CGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA > 1:462853/1‑99 GGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > 1:1387833/1‑99 GCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:1136665/1‑99 CAGTGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCT < 1:1218686/99‑1 TGTCACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCA < 2:2155210/99‑1 ACGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGA < 1:1793454/99‑1 CGCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT > 1:1748003/1‑99 GCTCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATT < 1:1763225/99‑1 TCGTTTTTACCCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTT < 2:1739115/99‑1 CCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACA < 2:2297367/99‑1 CCAGGTACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACA < 2:950346/99‑1 ACTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT < 1:795609/99‑1 CCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/986366‑986451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT < NC_000913/1050545‑1050451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |