Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,994,371 T→C 13.2% pseudogene (433/503 nt) pbl → transglycosylase domain‑containing protein Pbl

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,994,3710TC13.2% 253.4 / 23.6 91pseudogene (433/503 nt)pbltransglycosylase domain‑containing protein Pbl
Reads supporting (aligned to +/- strand):  ref base T (35/44);  new base C (5/7);  total (40/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

TTTATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAG  >  NC_000913/2994274‑2994467
                                                                                                 |                                                                                                
tttATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAata                                                                                                 <  1:2385819/99‑1 (MQ=255)
tttATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAata                                                                                                 <  1:1839626/99‑1 (MQ=255)
    tataACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGcc                                                                                             >  2:1061824/1‑99 (MQ=255)
     ataACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGccc                                                                                            <  2:2163545/99‑1 (MQ=255)
        aCCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                                         <  1:237212/99‑1 (MQ=255)
        aCCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                                         >  1:2330217/1‑99 (MQ=255)
         ccATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaaa                                                                                        >  2:2432410/1‑99 (MQ=255)
          cATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaaaa                                                                                       <  2:1210752/99‑1 (MQ=255)
            tttttCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAata                                                                                     <  1:923815/99‑1 (MQ=255)
            tttttCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAata                                                                                     >  1:662548/1‑99 (MQ=255)
              tttCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatata                                                                                   >  2:1743410/1‑99 (MQ=255)
              tttCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatata                                                                                   <  2:2559030/99‑1 (MQ=255)
                tCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAatatata                                                                                 >  1:2161596/1‑99 (MQ=255)
                   cGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTg                                                                              <  1:621296/99‑1 (MQ=255)
                   cGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTg                                                                              <  1:1682210/99‑1 (MQ=255)
                    gTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGt                                                                             <  2:1968210/99‑1 (MQ=255)
                     ttGTGGAGTAACGTGTCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGta                                                                            <  1:869992/99‑1 (MQ=255)
                     ttGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGta                                                                            >  1:122756/1‑99 (MQ=255)
                      tgtgGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtat                                                                           <  2:2314642/99‑1 (MQ=255)
                      tgtgGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtat                                                                           <  2:532572/99‑1 (MQ=255)
                       gtgGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtata                                                                          <  1:1536749/99‑1 (MQ=255)
                       gtgGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtata                                                                          <  1:661571/99‑1 (MQ=255)
                         ggAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtatata                                                                        <  1:1258649/99‑1 (MQ=255)
                          gAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATAc                                                                       >  1:435257/1‑99 (MQ=255)
                            gTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCa                                                                     <  1:1419849/99‑1 (MQ=255)
                            gTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCa                                                                     <  1:216424/99‑1 (MQ=255)
                            gTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCa                                                                     >  1:2006859/1‑99 (MQ=255)
                              aaCGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAgg                                                                   <  2:2059987/99‑1 (MQ=255)
                               aCGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGc                                                                  >  2:669766/1‑99 (MQ=255)
                               aCGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGc                                                                  >  1:1733252/1‑99 (MQ=255)
                                cGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCt                                                                 >  1:179448/1‑99 (MQ=255)
                                cGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCt                                                                 <  2:2139624/99‑1 (MQ=255)
                                   ggCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTaa                                                              <  1:104240/99‑1 (MQ=255)
                                     cAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATg                                                            <  2:1107345/99‑1 (MQ=255)
                                      aaTGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGa                                                           <  1:1608525/99‑1 (MQ=255)
                                          ccTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAAcca                                                       <  2:1608077/99‑3 (MQ=255)
                                          ccTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTa                                                       <  1:2165466/99‑1 (MQ=255)
                                          ccTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTa                                                       >  2:996383/1‑99 (MQ=255)
                                            tGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGa                                                     <  2:2472280/99‑1 (MQ=255)
                                             ggggACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGAc                                                    >  2:1796716/1‑99 (MQ=255)
                                               ggACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACaa                                                  >  2:1437393/1‑99 (MQ=255)
                                                gACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAAt                                                 <  1:1748439/99‑1 (MQ=255)
                                                gACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAAt                                                 <  2:2121069/99‑1 (MQ=255)
                                                 aCTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATc                                                >  2:1446814/1‑99 (MQ=255)
                                                  cTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCg                                               <  1:1250480/99‑1 (MQ=255)
                                                   ttATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGt                                              <  1:1592704/99‑1 (MQ=255)
                                                   ttATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGt                                              >  2:1150464/1‑99 (MQ=255)
                                                    tataATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTa                                             <  1:1681700/99‑1 (MQ=255)
                                                     ataATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTaa                                            >  1:185541/1‑99 (MQ=255)
                                                      taATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAg                                           <  1:806694/99‑1 (MQ=255)
                                                       aaTGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAgg                                          >  1:1682356/1‑99 (MQ=255)
                                                        aTGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGc                                         >  1:2350699/1‑99 (MQ=255)
                                                          gCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCtt                                       <  2:2374720/99‑1 (MQ=255)
                                                             ggTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAg                                    <  2:509801/99‑1 (MQ=255)
                                                             ggTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAg                                    <  1:2042736/99‑1 (MQ=255)
                                                              gTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGc                                   >  2:736190/1‑99 (MQ=255)
                                                               ttttGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGTTTAATGAACTAGACAATCGTAAGGCTTCAGCa                                  >  2:1899248/1‑99 (MQ=255)
                                                               ttttGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCa                                  <  1:458648/99‑1 (MQ=255)
                                                               ttttGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCa                                  >  1:1516243/1‑99 (MQ=255)
                                                                  tGCAATGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCaaaa                               <  1:1395674/99‑1 (MQ=255)
                                                                      aTGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAg                           >  2:2291866/1‑99 (MQ=255)
                                                                       tGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGc                          >  1:51722/1‑99 (MQ=255)
                                                                       tGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGc                          >  2:1889185/1‑99 (MQ=255)
                                                                       tGGATAACCAAAAAAAGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGc                          >  1:1725476/1‑99 (MQ=255)
                                                                        ggATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGcc                         <  2:1090521/99‑1 (MQ=255)
                                                                        ggATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGcc                         <  2:2122044/99‑1 (MQ=255)
                                                                         gATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCt                        >  2:532420/1‑99 (MQ=255)
                                                                          aTAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTa                       >  1:1257673/1‑99 (MQ=255)
                                                                          aTAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTa                       <  1:526073/99‑1 (MQ=255)
                                                                           tAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTaa                      >  2:1652646/1‑99 (MQ=255)
                                                                            aaCCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTaaa                     <  1:669766/99‑1 (MQ=255)
                                                                             aCCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAg                    >  2:1876220/1‑99 (MQ=255)
                                                                              ccAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGc                   >  2:67684/1‑99 (MQ=255)
                                                                                 aaaaaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCctc                >  2:1696848/1‑99 (MQ=255)
                                                                                 aaaaaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCctc                <  2:2148885/99‑1 (MQ=255)
                                                                                  aaaaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCctct               >  1:434913/1‑99 (MQ=255)
                                                                                  aaaaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCctct               <  1:2088215/99‑1 (MQ=255)
                                                                                   aaaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCtt              <  2:956813/99‑1 (MQ=255)
                                                                                    aaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttt             >  1:61227/1‑99 (MQ=255)
                                                                                    aaaGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttt             >  2:292413/1‑99 (MQ=255)
                                                                                    aaaGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttt             <  2:1908289/99‑1 (MQ=255)
                                                                                     aaGAGACAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCtttt            <  2:1218815/99‑1 (MQ=255)
                                                                                      agagACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttttt           <  2:1806687/99‑1 (MQ=255)
                                                                                      agagACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttttt           <  1:1756671/99‑1 (MQ=255)
                                                                                        agaCAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttttttt         <  1:1084357/99‑1 (MQ=255)
                                                                                        agaCAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCttttttt         >  1:1263065/1‑99 (MQ=255)
                                                                                         gaCAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCtttttttt        <  1:2362242/99‑1 (MQ=255)
                                                                                          aCAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTta       >  1:656378/1‑99 (MQ=255)
                                                                                          aCAGCAACATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTta       <  2:54564/99‑1 (MQ=255)
                                                                                            aGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTtata     >  1:1347501/1‑99 (MQ=255)
                                                                                              cAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTtatata   <  2:1151939/99‑1 (MQ=255)
                                                                                               aaTATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAg  <  1:1374479/99‑1 (MQ=255)
                                                                                               aaTATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAg  >  1:98116/1‑99 (MQ=255)
                                                                                                 |                                                                                                
TTTATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAG  >  NC_000913/2994274‑2994467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: