Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 4,542,161 IS5 (+) +4 bp 10.1% coding (125‑128/597 nt) fimE → regulator for fimA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3652036 =NA (NA)12 (0.130) 11/176 NT 10.5% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 4542161 = 98 (1.070)coding (125/597 nt) fimE regulator for fimA
* ? NC_000913 = 3653230NA (NA)10 (0.100) 10/176 NT 8.9% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 4542164 98 (1.070)coding (128/597 nt) fimE regulator for fimA

Only 100 of 144 total aligned reads displayed.

AGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAC  >  NC_000913/4542066‑4542262
                                                                                                  |                                                                                                  
  aagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTg                                                                                                  >  1:1440760/1‑99 (MQ=255)
   agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGa                                                                                                 >  2:541620/1‑99 (MQ=255)
     ttCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAAc                                                                                               <  1:506396/99‑1 (MQ=255)
     ttCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAAc                                                                                               <  1:2428235/99‑1 (MQ=255)
     gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccttagtaaaa                                                                                               >  1:1016809‑M2/91‑95 (MQ=255)
       cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTg                                                                                             >  2:2058459/1‑99 (MQ=255)
        aGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGc                                                                                            >  2:1022387/1‑99 (MQ=255)
         ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGggaaggtgc                                                                                           <  1:2190575‑M2/99‑10 (MQ=255)
         ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                           >  2:2383097/1‑99 (MQ=255)
          gCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCtt                                                                                          <  2:1800490/99‑1 (MQ=255)
           ccATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTg                                                                                         >  2:1569625/1‑99 (MQ=255)
             atgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt                                                                                       <  2:854645/99‑1 (MQ=255)
              tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGggaaggtgcgaaca                                                                                      <  2:1099519‑M2/99‑15 (MQ=255)
              tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                      >  1:91348/1‑99 (MQ=255)
              tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                      >  1:470471/1‑99 (MQ=255)
              tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                      >  1:2430427/1‑99 (MQ=255)
              ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATc                                                                                      <  2:1270729‑M2/18‑1 (MQ=255)
                atgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTg                                                                                    >  2:1514442/1‑99 (MQ=255)
                 tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGc                                                                                   >  1:409455/1‑99 (MQ=255)
                 tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGc                                                                                   <  1:1593517/99‑1 (MQ=255)
                  aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctaccTTAGTGAACTGCTTGATCTGCa                                                                                  <  1:2253656‑M2/22‑1 (MQ=255)
                     ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccct                                                                               <  1:827823‑M2/99‑22 (MQ=255)
                      gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                              <  1:352507/99‑1 (MQ=255)
                         gTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccctgata                                                                           >  2:1543062‑M2/1‑74 (MQ=255)
                           ttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGga                                                                         <  2:211407/99‑1 (MQ=255)
                             gTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacc                                                                       >  2:518718/1‑99 (MQ=255)
                              ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                      >  1:949233/1‑99 (MQ=255)
                               tACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacctt                                                                     <  2:2404807/99‑1 (MQ=255)
                                 cGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga                                                                   <  2:2005603/99‑1 (MQ=255)
                                 cGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga                                                                   >  1:1638492/1‑99 (MQ=255)
                                 cGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttga                                                                   <  2:1720530/99‑1 (MQ=255)
                                   gggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgaccttgacc                                                                 <  1:1654908/99‑1 (MQ=255)
                                      cAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTa                                                              <  1:1801128/99‑1 (MQ=255)
                                       aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTaa                                                             >  1:2438879/1‑99 (MQ=255)
                                         aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATg                                                           >  2:1137403‑M2/55‑99 (MQ=255)
                                           ggAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGaa                                                         <  2:909215/99‑1 (MQ=255)
                                            gAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAg                                                        >  1:2488281/1‑99 (MQ=255)
                                            gAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAg                                                        >  1:2044585/1‑99 (MQ=255)
                                             aGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAgg                                                       >  2:719650/1‑99 (MQ=255)
                                               ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                     <  2:186285/99‑1 (MQ=255)
                                               ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                     <  2:596411/99‑1 (MQ=255)
                                               aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                     >  1:1964441‑M2/49‑99 (MQ=255)
                                                cAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAg                                                    >  2:1586974/1‑99 (MQ=255)
                                                 agagATTGTTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGa                                                   <  1:1858392/99‑1 (MQ=255)
                                                  gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                                  >  2:695267/1‑99 (MQ=255)
                                                   agaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaat                                                 <  2:2257027/99‑1 (MQ=255)
                                                    gaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaata                                                >  2:1623843/1‑99 (MQ=255)
                                                      ttattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaa                                              <  2:2244753/99‑1 (MQ=255)
                                                      ttattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaa                                              >  1:1967737/1‑99 (MQ=255)
                                                      ttattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaa                                              <  1:904148/99‑1 (MQ=255)
                                                       tattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaat                                             <  2:2058663/99‑1 (MQ=255)
                                                         ttGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAatat                                           >  1:450485/1‑99 (MQ=255)
                                                          tGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATAtt                                          <  2:2453004/99‑1 (MQ=255)
                                                          tGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATAtt                                          <  1:1137492/99‑1 (MQ=255)
                                                           gTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTc                                         >  2:1330193/1‑99 (MQ=255)
                                                           gTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTc                                         >  1:984316/1‑99 (MQ=255)
                                                            tCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCg                                        <  1:1815340/99‑1 (MQ=255)
                                                            gccgagaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCg                                        <  2:360877‑M2/64‑1 (MQ=255)
                                                             cTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGc                                       <  2:1187760/99‑1 (MQ=255)
                                                             cTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGc                                       <  2:1106117/99‑1 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  2:1811164/1‑99 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  2:912772/1‑99 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  2:1650975/1‑99 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  1:140782/1‑99 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  1:2512336/1‑99 (MQ=255)
                                                                 ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  2:659887/1‑99 (MQ=255)
                                                                 gaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  1:1058751‑M2/31‑99 (MQ=255)
                                                                 gaagaatttccccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                   >  2:1006013‑M2/31‑99 (MQ=255)
                                                                   cTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTg                                 <  2:1735852/99‑1 (MQ=255)
                                                                   cTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTg                                 >  1:1068277/1‑99 (MQ=255)
                                                                     gTTGGCATATCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                               >  2:2058897‑M2/1‑30 (MQ=255)
                                                                      ttGGCATATCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                              <  1:730657‑M2/99‑71 (MQ=255)
                                                                      ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaag                              >  2:1514302/1‑99 (MQ=255)
                                                                      ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTgaag                              >  2:983672/1‑99 (MQ=255)
                                                                         gCATATCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                           >  2:2469788‑M2/1‑26 (MQ=255)
                                                                         gCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                           >  2:551559/1‑99 (MQ=255)
                                                                          cATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACg                          <  2:2216117/99‑1 (MQ=255)
                                                                           cccgcttattcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACgg                         <  1:1264866‑M2/79‑1 (MQ=255)
                                                                           atatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACgg                         >  2:999105/1‑99 (MQ=255)
                                                                            tatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa                        <  2:867554/99‑1 (MQ=255)
                                                                            tatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa                        >  1:1919481/1‑99 (MQ=255)
                                                                              tCGGCATGGGATGCGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                      <  2:565131‑M2/99‑79 (MQ=255)
                                                                                 gCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTc                   >  1:1545415/1‑99 (MQ=255)
                                                                                   aTGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTa                 >  2:2415876/1‑99 (MQ=255)
                                                                                    tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc                >  2:1345266/1‑99 (MQ=255)
                                                                                     gggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAcc               >  2:2327972/1‑99 (MQ=255)
                                                                                        accttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt            >  2:509105‑M2/8‑99 (MQ=255)
                                                                                        accttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt            <  1:2062977‑M2/92‑1 (MQ=255)
                                                                                        aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt            >  2:372016/1‑99 (MQ=255)
                                                                                         tGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc           >  2:1066142/1‑99 (MQ=255)
                                                                                         tGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc           >  1:2190057/1‑99 (MQ=255)
                                                                                         ccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc           >  2:2226135‑M2/7‑99 (MQ=255)
                                                                                            gTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAcc        <  1:319534/99‑1 (MQ=255)
                                                                                             tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc       >  1:2276780/1‑99 (MQ=255)
                                                                                             tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc       >  2:466648/1‑99 (MQ=255)
                                                                                             tATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc       >  1:425227/1‑99 (MQ=255)
                                                                                               ttAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac     <  1:1870085‑M2/99‑96 (MQ=255)
                                                                                                 aGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTa   >  1:1527718/1‑99 (MQ=255)
                                                                                                  gTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAc  >  2:264645/1‑99 (MQ=255)
                                                                                                  gTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAc  >  2:2536349/1‑99 (MQ=255)
                                                                                                  |                                                                                                  
AGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAC  >  NC_000913/4542066‑4542262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.