| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 81 (0.700) | 71 (0.690) | 52/158 | NT | 47.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 84 (0.810) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
Only 100 of 275 total aligned reads displayed.
AATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTT > NC_000913/4542592‑4542788 | gacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAAc > 2:1623989‑M1/88‑99 (MQ=255) atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Atttt < 1:188642‑M1/99‑5 (MQ=255) tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttg > 1:2543311‑M1/1‑94 (MQ=255) ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttga > 1:2240423‑M1/1‑93 (MQ=255) ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGt < 1:1378240/99‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcata > 2:2155645‑M1/1‑87 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcata > 2:1159218‑M1/1‑87 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCatat < 2:1068606/99‑1 (MQ=255) tcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCat > 2:952032‑M1/76‑99 (MQ=255) aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCata > 1:330811/1‑99 (MQ=255) aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagagga < 1:2986915‑M1/99‑18 (MQ=255) aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCataa > 1:2024548/1‑99 (MQ=255) ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCataaat < 2:1706606‑M1/28‑1 (MQ=255) aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagc > 2:1758132‑M1/1‑79 (MQ=255) ttAAAAAGTGGAGAGGCTCTATTTAACTTGTTGTAAATAAAGTTAAAAAAAGAAATAAATACTAGACAATTGGGACC‑AAACTGTAAATATCatagataa > 2:293908/1‑99 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcat < 1:1792979‑M1/99‑23 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCTTATCATAAATAAg > 1:1752724/1‑99 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcat < 1:1022879‑M1/99‑24 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcg < 2:803047‑M1/99‑26 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTa > 2:1087369/1‑99 (MQ=255) gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACGATTGGGGCC‑tttgactcatagaggaaagcatcgcgga < 1:2778539‑M1/99‑29 (MQ=255) gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcgg > 1:2366351‑M1/1‑71 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAACTGTCCATATCATAAATAAGTTACGt > 2:2823605/1‑99 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTAt > 2:408821/1‑99 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTAt < 2:2442228/99‑1 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaac < 1:2181768‑M1/99‑34 (MQ=255) tgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTAttttt > 2:637561‑M1/57‑99 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaacttt < 2:2857175‑M1/99‑38 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa > 2:1807180/1‑99 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1652263/99‑1 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 2:447808/1‑99 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:1240009/1‑99 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:284133‑M1/51‑1 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa > 1:1421384/1‑99 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 2:199362‑M1/44‑99 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttattt < 1:1207325‑M1/99‑50 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:2474542/99‑1 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 2:2527653/99‑1 (MQ=255) attgccaacactgcacagttttcacataaaagatgaaacatTTGGGGCC‑AAACTGTATATATCATAAATAAGTTACAAATTATGTCTCAAGCATaaaaa < 2:522585‑M1/58‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt > 2:2146771‑M1/1‑49 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata > 1:537846‑M1/40‑99 (MQ=255) gccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 2:1672709‑M1/39‑99 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt < 1:1709635/99‑1 (MQ=255) caacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt < 2:1866032‑M1/62‑1 (MQ=255) aacactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:424513‑M1/37‑99 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:599767‑M1/1‑44 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1866032‑M1/1‑44 (MQ=255) acactgcacagttttcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa < 1:2155645‑M1/64‑1 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCA‑Attttgactcatagaggaaagcatcgcgggcaaactttttcaggttattcgttggct > 2:2060847‑M1/1‑43 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 2:1300618‑M1/66‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:1562562/1‑99 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:1466045‑M1/99‑59 (MQ=255) ctgcacagttttcccccaaaagatgaaacattTTGGGGCC‑ATGCTGTCCATATCATAATTAAGTTACGTAGTTTTTCTCAAGCATAAAAATATTaaaaa > 2:376943‑M1/33‑99 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa > 2:2569494‑M1/32‑99 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 1:2491776‑M1/1‑40 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 1:2956742‑M1/1‑40 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 2:2242318/1‑99 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg > 2:2026004/1‑99 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc < 2:1239151‑M1/99‑64 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa > 2:703661/1‑99 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa < 1:1992228‑M1/73‑1 (MQ=255) agttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa < 1:1920260‑M1/74‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 2:1514569/1‑99 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa < 1:2607386‑M1/75‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 2:58429‑M1/99‑67 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa > 1:1971140/1‑99 (MQ=255) tcccccaaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg > 1:1341008‑M1/22‑99 (MQ=255) aCAAATAAATACAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt < 2:2271752‑M1/99‑72 (MQ=255) aCAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCa < 2:1921029/99‑1 (MQ=255) ccccaaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt < 1:2400327‑M1/81‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt > 2:2646992/1‑99 (MQ=255) aaaagatgaaacattTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTTAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa < 2:2698788‑M1/84‑1 (MQ=255) taaataCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa < 1:2100873/99‑1 (MQ=255) taaataCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa > 2:871235/1‑99 (MQ=255) aaaagatgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa > 1:684441‑M1/15‑99 (MQ=255) ataCAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttat < 1:88175‑M1/99‑80 (MQ=255) taCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGt < 2:1660669/99‑1 (MQ=255) taCAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGt > 1:3034401/1‑99 (MQ=255) atgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt > 1:2661473‑M1/10‑99 (MQ=255) tgaaacatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt < 1:810428‑M1/91‑1 (MQ=255) cAAGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttattta > 2:346176‑M1/1‑17 (MQ=255) cAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt > 2:1570403/1‑99 (MQ=255) cAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt < 1:1109176/99‑1 (MQ=255) aGACAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttata > 2:1296484‑M1/1‑15 (MQ=255) aGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa > 2:2295238/1‑99 (MQ=255) gACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat > 1:2002087/1‑99 (MQ=255) acatTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata < 1:377626‑M1/95‑1 (MQ=255) aCAATTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttataga > 1:2452070‑M1/1‑13 (MQ=255) aCAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata > 1:935417/1‑99 (MQ=255) aCAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata > 2:1406815/1‑99 (MQ=255) tTTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGt > 1:2270286‑M1/2‑99 (MQ=255) aTTGGGGCC‑tttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtt < 1:2333668‑M1/99‑90 (MQ=255) aTTGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgt > 1:905788‑M1/1‑10 (MQ=255) tGGGGCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgttt < 1:126199‑M1/99‑92 (MQ=255) ggggCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgttta < 1:2647800‑M1/99‑93 (MQ=255) ggggCC‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgttta < 2:673149‑M1/99‑93 (MQ=255) GGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa > 1:1618147‑M1/1‑99 (MQ=255) c‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattg > 1:477368‑M1/1‑2 (MQ=255) c‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattg < 2:893122‑M1/99‑98 (MQ=255) c‑Attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattg < 1:1070767‑M1/99‑98 (MQ=255) | AATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCC‑AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTT > NC_000913/4542592‑4542788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |