| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 60 (0.460) | 22 (0.170) | 21/174 | NT | 29.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542995 = | 48 (0.370) | intergenic (+362/‑120) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
ACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAA > NC_000913/4542898‑4543091 | aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑aaa > 2:864047/1‑99 (MQ=255)aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑aaa > 2:70832/1‑99 (MQ=255) aTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATg > 1:2581320/1‑99 (MQ=255) tCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGt > 2:1422311/1‑99 (MQ=255) tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGttt > 1:1491767/1‑99 (MQ=255) tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGttt < 2:2515034/99‑1 (MQ=255) ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTc > 1:1367268/1‑99 (MQ=255) taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCa < 2:2428344/99‑1 (MQ=255) taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCa < 1:2062442/99‑1 (MQ=255) aacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCa < 1:3089305‑M2/9‑1 (MQ=255) aaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCAt > 1:3036928/1‑99 (MQ=255) aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATc > 2:562593/1‑99 (MQ=255) aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATc > 2:2197221/1‑99 (MQ=255) ataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCt < 1:2432855/99‑1 (MQ=255) ttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCttt < 1:1562406‑M2/14‑1 (MQ=255) aTAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTggg > 2:3370193/1‑99 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGaa > 1:3456886/1‑99 (MQ=255) tttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGaa < 1:57825‑M2/22‑1 (MQ=255) ttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGaaa > 2:2261967‑M2/77‑99 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAAc < 1:113696/99‑1 (MQ=255) atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCa < 1:2104085/99‑1 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt > 2:2670840/1‑99 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg < 1:2452509/99‑1 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa > 1:2613297/1‑99 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 2:2287928/1‑99 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 1:1745652‑M2/59‑99 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 2:2113280/1‑99 (MQ=255) ttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:2251855‑M2/44‑1 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 2:200194/1‑99 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 2:3202403/1‑99 (MQ=255) aaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa < 1:404410/99‑1 (MQ=255) atgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:1839643‑M2/54‑99 (MQ=255) tgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:3057008‑M2/53‑99 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAGTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 2:1567914/1‑99 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 2:747540/99‑1 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 2:1491048‑M2/48‑1 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt < 1:1815231/99‑1 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 2:1817808/1‑99 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 2:596333/99‑1 (MQ=255) gaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 2:649344‑M2/54‑1 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac > 1:3121329/1‑99 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca < 2:541054/99‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca > 1:2607290/1‑99 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa > 1:504242‑M2/42‑99 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:1244203/1‑99 (MQ=255) aatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:394911‑M2/59‑1 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa > 2:1742021/1‑99 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa > 1:2830270/1‑99 (MQ=255) ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa < 2:3407520/99‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:2857122‑M2/62‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:1284871/99‑1 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg > 1:2462813/1‑99 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:2868066/1‑99 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 2:1741714/99‑1 (MQ=255) cTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:593946/99‑1 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa > 2:2025487/1‑99 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa > 1:1193787/1‑99 (MQ=255) tttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa > 2:1189178‑M2/28‑99 (MQ=255) ttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa < 2:223535/99‑1 (MQ=255) ttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa > 2:1604815/1‑99 (MQ=255) ttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa < 1:1104419‑M2/73‑1 (MQ=255) ctctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa > 1:2880750/1‑99 (MQ=255) atgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg < 1:1541273‑M2/75‑1 (MQ=255) tgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTCCAAAACAAAGTGTACAGAACGa > 2:1152816‑M2/24‑99 (MQ=255) tgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa < 2:3269558‑M2/76‑1 (MQ=255) tgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa < 2:1745077‑M2/76‑1 (MQ=255) tctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc < 1:1685722/99‑1 (MQ=255) gatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc < 2:291194‑M2/77‑1 (MQ=255) tggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc > 2:3288118‑M2/19‑99 (MQ=255) aaaaTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTc < 2:836412/99‑1 (MQ=255) aaTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGa > 2:2110211/1‑99 (MQ=255) aTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAt < 1:759262/99‑1 (MQ=255) aTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAt < 2:1844519/99‑1 (MQ=255) gccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt < 2:1472430‑M2/92‑1 (MQ=255) aaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaaa < 2:3348091‑M2/97‑1 (MQ=255) aaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaaa < 1:2543963‑M2/97‑1 (MQ=255) | ACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAA > NC_000913/4542898‑4543091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |