New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542682 =	93 (0.870)	6 (0.060)	6/174	NT	6.5%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	4542995 =	82 (0.770)					intergenic (+362/‑120)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

CATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAA  >  NC_000913/4542899‑4543091                                                                                                  |                                                                                                 catatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaaa                                                                                                 <  1:1391929‑M2/2‑1 (MQ=255) cATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAAt                                                                                                >  1:543910/1‑99 (MQ=255)  aTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATg                                                                                               >  1:2159298/1‑99 (MQ=255)  aTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATg                                                                                               <  2:816624/99‑1 (MQ=255)   tCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGt                                                                                              <  1:2090075/99‑1 (MQ=255)   tCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGt                                                                                              <  2:1389035/99‑1 (MQ=255)    cTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGtt                                                                                             <  1:1709674/99‑1 (MQ=255)     tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGttt                                                                                            >  2:1736164/1‑99 (MQ=255)      ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTc                                                                                           >  2:486140/1‑99 (MQ=255)       taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCa                                                                                          <  2:1545351/99‑1 (MQ=255)       taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCa                                                                                          <  2:358740/99‑1 (MQ=255)       taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCa                                                                                          <  1:1864675/99‑1 (MQ=255)        aacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCa                                                                                          >  1:2045642‑M2/91‑99 (MQ=255)         aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAATGTTTCAt                                                                                         <  2:2742170/99‑1 (MQ=255)          ataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCt                                                                                       <  1:1843188/99‑1 (MQ=255)           taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCtt                                                                                      >  2:1909107/1‑99 (MQ=255)           taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCtt                                                                                      <  2:531308/99‑1 (MQ=255)             aaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCtttt                                                                                    >  1:136770/1‑99 (MQ=255)             aaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCtttt                                                                                    >  1:2702975/1‑99 (MQ=255)             aaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCtttt                                                                                    >  1:1846741/1‑99 (MQ=255)              aGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTg                                                                                   >  1:162141/1‑99 (MQ=255)                  tgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTgggg                                                                                >  1:409465‑M2/81‑99 (MQ=255)                  aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTggggg                                                                               >  1:1109829/1‑99 (MQ=255)                   aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGa                                                                              <  2:1484762/99‑1 (MQ=255)                    cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGaa                                                                             <  2:122369/99‑1 (MQ=255)                    cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGaa                                                                             >  1:1887837/1‑99 (MQ=255)                      aTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGaaaa                                                                           >  2:2382916/1‑99 (MQ=255)                      aTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGaaaa                                                                           <  2:1555208/99‑1 (MQ=255)                       tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAAc                                                                          >  2:874636/1‑99 (MQ=255)                        aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACt                                                                         >  2:2817614/1‑99 (MQ=255)                         gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtg                                                                        <  1:284610/99‑1 (MQ=255)                         gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtg                                                                        <  2:2053148/99‑1 (MQ=255)                         gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtg                                                                        >  1:1606554/1‑99 (MQ=255)                          aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtgt                                                                       <  2:1891086/99‑1 (MQ=255)                          aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtgt                                                                       <  2:2564457/99‑1 (MQ=255)                           atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                      >  2:511683/1‑99 (MQ=255)                           atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                      >  2:142940/1‑99 (MQ=255)                              ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                                                   >  1:1768569/1‑99 (MQ=255)                                  gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                               >  1:1165053/1‑99 (MQ=255)                                    caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                             <  1:1268660/99‑1 (MQ=255)                                     aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                                                            <  2:1372405/99‑1 (MQ=255)                                      acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                           >  2:108306/1‑99 (MQ=255)                                      acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                           >  2:1735171/1‑99 (MQ=255)                                      acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                           >  1:2537658/1‑99 (MQ=255)                                       caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg                                                          <  1:317751/99‑1 (MQ=255)                                       caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg                                                          >  1:2753257/1‑99 (MQ=255)                                         aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                        >  1:667163/1‑99 (MQ=255)                                          aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                                                       >  2:1330685/1‑99 (MQ=255)                                          aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                                                       >  1:480398/1‑99 (MQ=255)                                          aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                                                       >  2:504819/1‑99 (MQ=255)                                           tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa                                                      >  1:145115/1‑99 (MQ=255)                                            aaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                     >  2:1544650/1‑99 (MQ=255)                                               cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc                                                  >  2:2350157/1‑99 (MQ=255)                                               cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc                                                  <  2:1809498/99‑1 (MQ=255)                                                tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                 >  2:1625166/1‑99 (MQ=255)                                                tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                 <  2:2764781/99‑1 (MQ=255)                                                  aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                               <  1:1945450/99‑1 (MQ=255)                                                  aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                               <  1:1424918/99‑1 (MQ=255)                                                  aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                               >  2:681078/1‑99 (MQ=255)                                                      aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca                                           >  2:1586775/1‑99 (MQ=255)                                                       gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                          >  1:2568441/1‑99 (MQ=255)                                                       aaaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca                                           >  1:1516369‑M2/44‑99 (MQ=255)                                                        aaaatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                          >  1:759410‑M2/43‑99 (MQ=255)                                                         ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                        >  1:681143/1‑99 (MQ=255)                                                          aatacgtaacttatttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                        >  1:1478232‑M2/41‑99 (MQ=255)                                                            tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                     >  2:1640802/1‑99 (MQ=255)                                                            tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                     <  1:519671/99‑1 (MQ=255)                                                             ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                    >  2:477018/1‑99 (MQ=255)                                                                cgATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                 <  2:932149/99‑1 (MQ=255)                                                                cgATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                 <  1:1156109/99‑1 (MQ=255)                                                                cgATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                 >  1:1226419/1‑99 (MQ=255)                                                                 gATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt                                <  1:1982688/99‑1 (MQ=255)                                                                    gCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa                             >  2:2242414/1‑99 (MQ=255)                                                                      tttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa                           >  1:1540781/1‑99 (MQ=255)                                                                      atttatgatatggacagtttggccccaaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg                            <  1:551849‑M2/71‑1 (MQ=255)                                                                       ttCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                          <  1:1797733/99‑1 (MQ=255)                                                                        tCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc                         >  2:2267424/1‑99 (MQ=255)                                                                         ccTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                        >  2:97564/1‑99 (MQ=255)                                                                          ctctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                       >  1:1542556/1‑99 (MQ=255)                                                                          ctctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                       <  1:2449698/99‑1 (MQ=255)                                                                          ctctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                       <  2:453124/99‑1 (MQ=255)                                                                          ctctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                       <  1:1929632/99‑1 (MQ=255)                                                                           tctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                      <  1:2742025/99‑1 (MQ=255)                                                                           tctATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                      <  2:2512507/99‑1 (MQ=255)                                                                              aTGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGc                   <  2:2666191/99‑1 (MQ=255)                                                                               tGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                  <  1:1129073/99‑1 (MQ=255)                                                                                 aGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCa                <  1:415632/99‑1 (MQ=255)                                                                                   tCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATg              <  2:1021379/99‑1 (MQ=255)                                                                                   tCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATg              >  2:987434/1‑99 (MQ=255)                                                                                    cAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt             <  1:289535/99‑1 (MQ=255)                                                                                    cAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt             <  1:2754523/99‑1 (MQ=255)                                                                                     aaaaTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTc            <  2:2429450/99‑1 (MQ=255)                                                                                      aaaTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCg           >  2:2226192/1‑99 (MQ=255)                                                                                      aaaTGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCg           <  2:1952770/99‑1 (MQ=255)                                                                                                aaAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaaa  <  1:2252600‑M2/97‑1 (MQ=255)                                                                                                  |                                                                                                 CATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCC‑AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAA  >  NC_000913/4542899‑4543091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.