| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 485,980 | IS1 (+) +9 bp | 23.2% | coding (220‑228/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 25 (0.260) | 25/176 | NT | 23.5% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 485980 = | 73 (0.850) | coding (220/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 19 (0.200) | 17/176 | NT | 18.9% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 485988 | 73 (0.850) | coding (228/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291305‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGC < NC_000913/485988‑485894 AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCT < 1:831463/99‑1 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATAT < 1:1340628/99‑1 TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGAT > 1:612400/1‑99 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGA < 1:28928/99‑1 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATC < 1:1065673/99‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTC < 1:1752352/99‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTC < 2:1183267/99‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCAC > 1:834397/1‑99 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCAC > 2:2090591/1‑99 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACA > 2:517111/1‑99 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGGTCCCAGATCTCACTGAACA < 2:323741/99‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAA > 2:403189/1‑99 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGAC > 1:1918459/1‑99 CACTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCT > 2:2081773/1‑99 CTAAATCAGTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTT < 2:668745/99‑1 GTAAGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATGTCACTGAACAAATCCGACTTGTCTTTAAAATGCC > 2:2430197/1‑99 AGTTGGCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGT > 1:1086137/1‑99 GCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGTATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATT > 1:1368427/1‑99 GCAGCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATT < 1:75174/99‑1 GCATCACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCA > 2:1251049/1‑99 CACCCTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGCTTGCACCGC > 1:1313227/1‑99 AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291305‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGC < NC_000913/485988‑485894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |