New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1291702 =	83 (0.870)	8 (0.080)	8/176	NT	8.8%	coding (246/909 nt)	galU	UTP‑‑glucose‑1‑phosphate uridylyltransferase
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

CCCTGACGAACTTGCATAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1291785‑1291702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  NC_000913/1979270‑1979173                                                                                                                                                                                        CCCTGACGAACTTGCATAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCCGGTGATGCTGCCAAC                                                                                     >  1:1613957/1‑99          ACTTGCATAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCCGGTGATGCTGCCAACTTACTGATT                                                                            <  2:2441395/99‑1           CTTGCATAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCCGGTGATGCTGCCAACTTACTGATTT                                                                           >  1:293402/1‑99                 TAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCCGGTGATGCTGCCAACTTACTGATTTAGTGTA                                                                     <  2:1988032/99‑1                                        ATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC                                              >  1:542062/1‑99                                                                     TTTTACACGTTTTTCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCT                 >  2:1030970/1‑99                                                                           ACGTTTTTCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT           <  2:443221/99‑1                                                                               TTTTCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGC       <  1:1117939/99‑1                                                                                    CGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  2:1646136/99‑1                                                                                                                                                                                        CCCTGACGAACTTGCATAATAGTCACGTGCGGTGGACAAATAGACTGCACTTCATCAAGCAGTTGACGTTTTACACGTTTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1291785‑1291702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  NC_000913/1979270‑1979173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.