BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	11 (0.100)	6/176	NT	8.7%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	4542161 =	116 (1.080)	11 (0.100)	6/176	NT	8.7%	coding (125/597 nt)	fimE	regulator for fimA

Only 100 of 182 total aligned reads displayed.

TAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGT  >  NC_000913/4542063‑4542259

tAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAt                                                                                                    >  2:1509624/1‑99 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  1:671053‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  1:2110825‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  2:2801490‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  2:2357428‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  1:516450‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  2:1167374‑M2/1‑1 (MQ=255)

actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                    <  1:834020‑M2/1‑1 (MQ=255)

 ctgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                   <  1:134120‑M2/2‑1 (MQ=255)

 ctgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                   >  1:412129‑M2/98‑99 (MQ=255)

  tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                  <  2:119943‑M2/3‑1 (MQ=255)

  tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                  >  2:1021395‑M2/97‑99 (MQ=255)

  tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                  >  1:1126031‑M2/97‑99 (MQ=255)

  tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                  <  2:54025‑M2/3‑1 (MQ=255)

  aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTa                                                                                                  >  1:1563975/1‑99 (MQ=255)

  aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTa                                                                                                  >  2:1303512/1‑99 (MQ=255)

   gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctgatatcagggacttgttcgcaccttccTTAg                                                                                                 <  1:2758388‑M2/4‑1 (MQ=255)

   gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                 <  2:448913‑M2/4‑1 (MQ=255)

   gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                 <  1:1346683‑M2/4‑1 (MQ=255)

    tcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt                                                                                                >  1:1242530‑M2/95‑99 (MQ=255)

    gaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGt                                                                                                >  2:2396663/1‑99 (MQ=255)

    gaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGt                                                                                                <  2:2554556/99‑1 (MQ=255)

    gaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGt                                                                                                >  2:56355/1‑99 (MQ=255)

     cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTg                                                                                               <  1:1527859‑M2/6‑1 (MQ=255)

       gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGaa                                                                                             <  1:2468658‑M2/8‑1 (MQ=255)

       gTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGaa                                                                                             >  2:953796/1‑99 (MQ=255)

       gTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGaa                                                                                             >  1:322088/1‑99 (MQ=255)

        ttCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAAc                                                                                            <  2:423418/99‑1 (MQ=255)

         tCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACt                                                                                           <  1:2012361/99‑1 (MQ=255)

           aGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGc                                                                                         >  2:2181138/1‑99 (MQ=255)

            ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                        <  2:389364/99‑1 (MQ=255)

            ggCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCt                                                                                        <  2:1232455/99‑1 (MQ=255)

                atgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGAt                                                                                    >  1:2810925/1‑99 (MQ=255)

                 tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                   <  1:2742461/99‑1 (MQ=255)

                 tgatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATc                                                                                   <  1:1622812/99‑1 (MQ=255)

                  gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCt                                                                                  >  2:1622400/1‑99 (MQ=255)

                  gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCt                                                                                  <  2:1787717/99‑1 (MQ=255)

                   atgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTg                                                                                 >  2:1737447/1‑99 (MQ=255)

                     gCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCa                                                                               <  1:1201585/99‑1 (MQ=255)

                      cAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAt                                                                              <  1:102022/99‑1 (MQ=255)

                      cAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCAt                                                                              >  2:2158318/1‑99 (MQ=255)

                        ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                                                                            >  1:2054004/1‑99 (MQ=255)

                        ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTa                                                                            <  2:1547725/99‑1 (MQ=255)

                         gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                           >  1:418633/1‑99 (MQ=255)

                         gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                           <  2:1063783/99‑1 (MQ=255)

                         gCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTAt                                                                           <  1:1158365/99‑1 (MQ=255)

                            gTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAg                                                                        >  1:2773163/1‑99 (MQ=255)

                             tttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAgg                                                                       <  1:1502593/99‑1 (MQ=255)

                              ttGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGga                                                                      <  1:1401410/99‑1 (MQ=255)

                               tGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgac                                                                     <  2:506654/99‑1 (MQ=255)

                                 ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                   <  2:1453/99‑1 (MQ=255)

                                 ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                   <  2:2003004/99‑1 (MQ=255)

                                 ttACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgacct                                                                   <  1:891362/99‑1 (MQ=255)

                                     ggggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGCATTAGTGAACTGCTTGATCTGCATTATCAGgcccttgac                                                               <  1:1496797/99‑1 (MQ=255)

                                      gggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGgcccttgacc                                                              >  1:994380/1‑99 (MQ=255)

                                          aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTaa                                                          <  2:973408/99‑1 (MQ=255)

                                          aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTaa                                                          <  1:2061314/99‑1 (MQ=255)

                                          aaCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTaa                                                          <  2:2291829/99‑1 (MQ=255)

                                             gggAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGa                                                       <  1:1881566/99‑1 (MQ=255)

                                               ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAg                                                     <  1:938572‑M2/48‑1 (MQ=255)

                                                aGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAgg                                                    <  1:1004802/99‑1 (MQ=255)

                                                aGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAgg                                                    <  2:1436499/99‑1 (MQ=255)

                                                 gCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGt                                                   >  2:2804630/1‑99 (MQ=255)

                                                  ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                  >  2:1024123/1‑99 (MQ=255)

                                                  ccAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTa                                                  >  1:2454742/1‑99 (MQ=255)

                                                   cAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAg                                                 <  1:2652844/99‑1 (MQ=255)

                                                     gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGaa                                               <  2:487959/99‑1 (MQ=255)

                                                     gagaTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaa                                               >  1:460315/1‑99 (MQ=255)

                                                         ttattGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGaataaa                                           >  1:748043/1‑99 (MQ=255)

                                                              gTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTc                                      <  1:2636702/99‑1 (MQ=255)

                                                               tCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCg                                     <  2:2175409/99‑1 (MQ=255)

                                                                cTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGc                                    <  2:737852/99‑1 (MQ=255)

                                                                cTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGc                                    <  2:22675/99‑1 (MQ=255)

                                                                  gatctcatatcagggacttgttcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCg                                  <  1:708702‑M2/67‑1 (MQ=255)

                                                                   atctcatatcagggacttgttcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGa                                 >  2:2822162‑M2/32‑99 (MQ=255)

                                                                    ttCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGAc                                <  2:2017494/99‑1 (MQ=255)

                                                                     tCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACt                               <  1:193857/99‑1 (MQ=255)

                                                                              atatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTACAATAAATATTCGCCGACTGAAGAACgg                      >  2:2740487/1‑99 (MQ=255)

                                                                               tatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa                     >  1:547910/1‑99 (MQ=255)

                                                                               tatCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa                     >  2:623618/1‑99 (MQ=255)

                                                                               tatCGGCATGGGATGCGTATTAGTGAACTCCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGa                     >  1:88728/1‑99 (MQ=255)

                                                                                  cttgttcgcaccttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAttt                  >  1:1971635‑M2/17‑99 (MQ=255)

                                                                                     cATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCt               >  1:1989261/1‑99 (MQ=255)

                                                                                      aTGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTa              <  2:2021474/99‑1 (MQ=255)

                                                                                       tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc             <  1:2339965/99‑1 (MQ=255)

                                                                                       tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc             >  1:1092959/1‑99 (MQ=255)

                                                                                       tGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAc             >  2:1331574/1‑99 (MQ=255)

                                                                                        gggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAcc            <  1:1286352/99‑1 (MQ=255)

                                                                                         ggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCg           >  2:698322/1‑99 (MQ=255)

                                                                                         ggATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCg           <  1:689042/99‑1 (MQ=255)

                                                                                          gATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGt          >  1:609511/1‑99 (MQ=255)

                                                                                           accttccTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt         >  1:1855473‑M2/8‑99 (MQ=255)

                                                                                           aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGtt         <  1:2728519/99‑1 (MQ=255)

                                                                                            tGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTc        >  1:816596/1‑99 (MQ=255)

                                                                                              cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAc      <  1:2197811/99‑1 (MQ=255)

                                                                                                tATTAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCAccc    <  2:465948/99‑1 (MQ=255)

                                                                                                 aTTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCg   <  1:2678969/99‑1 (MQ=255)

                                                                                                  ttAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGt  >  2:1174920/1‑99 (MQ=255)

                                                                                                  ttAGTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGt  <  1:981577/99‑1 (MQ=255)

                                                                                                  ttAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGt  <  2:322088/99‑1 (MQ=255)

TAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGT  >  NC_000913/4542063‑4542259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.