New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 339512785 (0.890)3 (0.040) 3/146 NT 3.2% coding (1132/3801 nt) yhdP AsmA2 domain‑containing protein
?NC_000913 3395995 = 109 (1.380)coding (264/3801 nt) yhdP AsmA2 domain‑containing protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

CGGTAATAATTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCAGCT  >  NC_000913/3395032‑3395225
                                                                                               |                                                                                                  
cGGTAATAATTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGtt                                                                                                 >  2:1889677/1‑99 (MQ=255)
     ataatTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCt                                                                                            <  2:1223182/99‑1 (MQ=255)
      taatTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCtt                                                                                           <  2:1144289/99‑1 (MQ=255)
      taatTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCtt                                                                                           >  2:237992/1‑99 (MQ=255)
        atTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGc                                                                                         >  2:707803/1‑99 (MQ=255)
        atTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGc                                                                                         <  1:8306/99‑1 (MQ=255)
         tttCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGcc                                                                                        <  2:1574108/99‑1 (MQ=255)
         tttCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGcc                                                                                        <  1:43315/99‑1 (MQ=255)
           tCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGc                                                                                      <  2:1133975/99‑1 (MQ=255)
           tCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGc                                                                                      <  2:402554/99‑1 (MQ=255)
             cATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTc                                                                                    <  2:1769045/99‑1 (MQ=255)
             cATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTc                                                                                    <  1:143106/99‑1 (MQ=255)
             cATTGCTTCCAGACCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTc                                                                                    >  2:2057379/1‑99 (MQ=255)
              aTTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCg                                                                                   >  2:1787510/1‑99 (MQ=255)
               ttGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCgg                                                                                  >  1:1395200/1‑99 (MQ=255)
               ttGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCgg                                                                                  >  2:184546/1‑99 (MQ=255)
                 gCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGtt                                                                                >  1:548795/1‑99 (MQ=255)
                 gCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGtt                                                                                >  2:806975/1‑99 (MQ=255)
                  cTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTtg                                                                               >  2:1621352/1‑99 (MQ=255)
                  cTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTtg                                                                               <  1:1197030/99‑1 (MQ=255)
                  cTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTtg                                                                               <  2:2301283/99‑1 (MQ=255)
                   ttCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTGAATCTTGCCGCTCGGTtgt                                                                              <  2:2109807/99‑1 (MQ=255)
                    tCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTtgtg                                                                             <  2:412593/99‑1 (MQ=255)
                       aGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTgg                                                                          >  1:1134688/1‑99 (MQ=255)
                        ggCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGa                                                                         <  1:1581939/99‑1 (MQ=255)
                         gCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAg                                                                        >  2:2479722/1‑99 (MQ=255)
                          ccAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAgc                                                                       <  1:1697503/99‑1 (MQ=255)
                           cAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAgcg                                                                      >  1:426043/1‑99 (MQ=255)
                             gATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGcc                                                                    <  1:980888/99‑1 (MQ=255)
                             gATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGcc                                                                    >  2:1752449/1‑99 (MQ=255)
                             gATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGcc                                                                    >  1:1629729/1‑99 (MQ=255)
                              aTCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGGGTGGAGCGCCa                                                                   >  2:615693/1‑99 (MQ=255)
                               tCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCaa                                                                  >  2:1199650/1‑99 (MQ=255)
                                cGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCaaa                                                                 <  2:2008329/99‑1 (MQ=255)
                                 gCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAAc                                                                >  2:1560952/1‑99 (MQ=255)
                                  cTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACa                                                               <  2:2209096/99‑1 (MQ=255)
                                   tCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCTTGAAGCGGGATATCCAGCGCCAGAGTGTTGTTATTGCCCCTCGATTGTGTGGAGCGCAAAACAt                                                              >  2:1909171/1‑99 (MQ=255)
                                      aCGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCAc                                                           >  2:1470200/1‑99 (MQ=255)
                                      aCGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCAc                                                           >  2:69878/1‑99 (MQ=255)
                                      aCGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCAc                                                           <  2:2048003/99‑1 (MQ=255)
                                       cGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCAcc                                                          <  2:350408/99‑1 (MQ=255)
                                         aTGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCa                                                        >  1:2472286/1‑99 (MQ=255)
                                          tGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAg                                                       >  1:918822/1‑99 (MQ=255)
                                              tGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCa                                                   >  1:461922/1‑99 (MQ=255)
                                                aaaaCGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAgg                                                 >  1:823848/1‑99 (MQ=255)
                                                aaaaCGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAgg                                                 >  2:1445995/1‑99 (MQ=255)
                                                aaaaCGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAgg                                                 <  1:253781/99‑1 (MQ=255)
                                                 aaaCGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGt                                                >  1:2248012/1‑99 (MQ=255)
                                                  aaCGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTg                                               <  1:1344474/99‑1 (MQ=255)
                                                       gTCTTGTCTGCCGCGTGAAGCGGGATATCCAGCGCCAGAGTaacgcgtttaaccgaaaattcg                                                                              <  1:258817‑M1/63‑23 (MQ=255)
                                                       gTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTaacgcgtttaaccgaaaattcg                                                                              >  2:258817‑M1/1‑41 (MQ=255)
                                                       gTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGt                                          <  2:266239/99‑1 (MQ=255)
                                                       gTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGt                                          >  1:1111045/1‑99 (MQ=255)
                                                       gTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGt                                          <  1:1163529/99‑1 (MQ=255)
                                                       gTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGt                                          >  1:306/1‑99 (MQ=255)
                                                        tCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGtt                                         >  2:1839261/1‑99 (MQ=255)
                                                           tGTCTGCCGCCTGGAACGGGGTGTCCAGCGCCAGAGTGTTAATTTTGCCGCTCGGTTGTGTGGGGCGCAAAACAGCACCAAGTAAAGGTGAACGTTTcg                                      <  2:626345/99‑1 (MQ=255)
                                                            gTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTcgc                                     <  2:1860903/99‑1 (MQ=255)
                                                             tCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTcgcg                                    <  1:1406160/99‑1 (MQ=255)
                                                             tCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTcgcg                                    >  2:1040068/1‑99 (MQ=255)
                                                                  cgccTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAg                               <  1:2208654/99‑1 (MQ=255)
                                                                   gccTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGc                              >  2:2417903/1‑99 (MQ=255)
                                                                      tGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCggg                           <  2:1441551/99‑1 (MQ=255)
                                                                         aGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGt                        >  1:1018160/1‑99 (MQ=255)
                                                                          gCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTa                       >  1:2117675/1‑99 (MQ=255)
                                                                          gCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTa                       >  1:155532/1‑99 (MQ=255)
                                                                          gCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTa                       <  1:1261024/99‑1 (MQ=255)
                                                                            gggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATg                     >  2:1926835/1‑99 (MQ=255)
                                                                            gggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATg                     >  2:2476144/1‑99 (MQ=255)
                                                                             ggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGc                    >  1:2162913/1‑99 (MQ=255)
                                                                             ggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGc                    <  2:671975/99‑1 (MQ=255)
                                                                             ggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGc                    >  2:1203485/1‑99 (MQ=255)
                                                                             ggATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGc                    >  2:275857/1‑99 (MQ=255)
                                                                              gacctccagCGCCAGTGTaacgcgtttaaccgaaaattcgacgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctg                   <  2:719483‑M1/95‑82 (MQ=255)
                                                                              gATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGcc                   <  1:771598/99‑1 (MQ=255)
                                                                                tatCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCt                 <  1:1083460/99‑1 (MQ=255)
                                                                                  tCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTcc               >  2:2459413/1‑99 (MQ=255)
                                                                                   ccAGCGCTAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCa              <  1:711265/99‑1 (MQ=255)
                                                                                   ccAGCGCCAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagc              >  1:474987‑M1/1‑13 (MQ=255)
                                                                                    cAGCGCCAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagct             >  2:2256166‑M1/1‑12 (MQ=255)
                                                                                     aGCGCCAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctg            >  1:829982‑M1/1‑11 (MQ=255)
                                                                                      gcgcCAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctgg           >  2:155756‑M1/1‑10 (MQ=255)
                                                                                      gcgcCAGAGTaacgcgtttaaccgaaaattcgccgccatcgtttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctgg           >  2:2483252‑M1/1‑10 (MQ=255)
                                                                                      gcgcCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGc           >  1:2414762/1‑99 (MQ=255)
                                                                                       cgcCAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggc          <  1:1270918‑M1/99‑91 (MQ=255)
                                                                                         ccAGAGTgacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctg        >  1:371963‑M1/1‑7 (MQ=255)
                                                                                         ccAGAGTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctg        >  2:49451‑M1/1‑7 (MQ=255)
                                                                                         ccAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTg        <  2:1042528/99‑1 (MQ=255)
                                                                                           agagTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctgag      >  1:89685‑M1/1‑5 (MQ=255)
                                                                                            gagTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCa     >  2:2508849/1‑99 (MQ=255)
                                                                                            gagTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCa     >  2:1929382/1‑99 (MQ=255)
                                                                                            gagTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCa     >  2:65688/1‑99 (MQ=255)
                                                                                            gagTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCa     >  2:2360351/1‑99 (MQ=255)
                                                                                             agTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctgagag    <  2:1398957‑M1/99‑97 (MQ=255)
                                                                                             agTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctgagag    >  1:2349387‑M1/1‑3 (MQ=255)
                                                                                             agTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCAg    >  2:1285053/1‑99 (MQ=255)
                                                                                             agTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCAg    <  1:1303359/99‑1 (MQ=255)
                                                                                              gTaacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctgagagc   <  1:2024122‑M1/99‑98 (MQ=255)
                                                                                               tgtTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCAGCt  >  1:2196775/1‑99 (MQ=255)
                                                                                               taacgcgtttaaccgaaaattcgccgccatcttttagttctgcacggatgtcgtgtgcttcaagcgtcgggccaaaattctgccagctggctgagagct  <  2:1714725‑M1/99‑99 (MQ=255)
                                                                                               |                                                                                                  
CGGTAATAATTTCCATTGCTTCCAGGCCAGATCGCTCCACGATGCCTGAAAACGGGTCTTGTCTGCCGCCTGAAGCGGGATATCCAGCGCCAGAGTGTTAATCTTGCCGCTCGGTTGTGTGGAGCGCCAAACATCACCCAGTGCAGGTGAAAGTTTCGCGGCCAGCGGGCGTATGCCCTCCAGGCCTGCCAGCT  >  NC_000913/3395032‑3395225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.