| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 4,542,367 | (TTTCTCGCCGCGGGAGTCGGC)1→2 | 17.0% | coding (331/597 nt) | fimE → | regulator for fimA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542347 = | 129 (0.860) | 24 (0.180) | 19/158 | NT | 17.0% | coding (311/597 nt) | fimE | regulator for fimA |
| ? | NC_000913 | = 4542367 | 118 (0.880) | coding (331/597 nt) | fimE | regulator for fimA | |||||
CCTTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4542453‑4542347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagaaaGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCA < NC_000913/4542367‑4542270 CCTTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCG > 2:2922562/1‑99CCTTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCG < 1:2327097/99‑1 CTTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGG < 1:3158127/99‑1 TTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGC > 1:604193/1‑99 TTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGC > 2:46380/1‑99 TTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGC > 1:2688473/1‑99 TTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGC > 1:2643932/1‑99 TAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCG > 1:3831829/1‑99 AACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGA < 2:3067995/99‑1 CATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGA > 2:729404/1‑99 CATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGA < 1:3745017/99‑1 CATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGA > 1:176514/1‑99 ATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAA < 1:3649827/99‑1 TATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA > 2:3582090/1‑99 TATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA > 1:3177262/1‑99 TATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA < 2:493686/99‑1 TATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA > 2:510034/1‑99 TATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA < 1:170492/99‑1 AGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCG > 2:2062227/1‑99 GATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGAC < 1:1065555/99‑1 TGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTC < 2:1095515/99‑1 AGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCC > 1:2537591/1‑99 TTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAG > 1:1685064/1‑99 TCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCG < 1:1993025/99‑1 CAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGT < 2:291274/99‑1 TACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAG > 2:3389654/1‑99 CGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCC < 1:2979055/99‑1 GCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGG > 2:3619866/1‑99 GCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGG > 2:3542865/1‑99 GCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGG > 1:1989647/1‑99 GCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGG < 2:1075065/99‑1 TCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCA > 2:1261385/1‑99 CGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAG < 1:3605879/99‑1 CGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAG < 2:413562/99‑1 CGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAG < 2:666031/99‑1 CGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCG > 2:1739284/1‑99 ATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTC < 2:3896630/99‑1 TAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTA > 1:957320/1‑99 TAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTA > 1:431108/1‑99 CTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACG < 1:3237083/99‑1 TGGCGAGAAAGCCGACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCC < 2:3506508/99‑1 ACTCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTC > 2:3326053/1‑99 TCCCGCGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCA < 1:1944721/99‑1 GGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTT < 1:941983/99‑1 GGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTT < 2:555257/99‑1 CGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCA < 2:3309169/99‑1 CGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCA < 2:3440976/99‑1 GAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC < 1:477232/99‑1 GAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC < 1:2242428/99‑1 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 2:1408068/1‑99 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 2:3885243/1‑99 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 1:2349327/1‑99 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG < 1:1794240/99‑1 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 1:1385011/1‑99 AGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACG > 1:1221391/1‑99 GAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGC < 2:2203668/99‑1 GAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGC > 1:3259882/1‑99 AAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCT > 1:2989871/1‑99 AAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTC > 2:1564181/1‑99 AAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTC < 1:3897524/99‑1 AGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCA > 2:301197/1‑99 CCTTAACATATGAGGATGAGTCTGCGTTACGGTTCCAGCTTCAATACCGGCATCGCGAATAATGCGATAGGCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4542453‑4542347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagaaaGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCA < NC_000913/4542367‑4542270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |