Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	281,950	T→C	T12A (ACC→GCC)	yagA ←	CP4‑6 prophage; integrase core domain‑containing protein YagA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	281,950	0	T	C	100.0%	225.6 / NA	62	T12A (ACC→GCC)	yagA	CP4‑6 prophage; integrase core domain‑containing protein YagA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (30/32);  total (30/32)

GCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCA  >  NC_000913/281814‑282084                                                                                                                                         |                                                                                                                                       gcggcACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCAtc                                                                                                                                     >  1:632650/1‑140 (MQ=255) gcggcACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCAtc                                                                                                                                     >  1:344105/1‑140 (MQ=255)      aCCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCg                                                                                                                                <  2:44183/140‑1 (MQ=255)       ccTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGc                                                                                                                               <  1:648856/140‑1 (MQ=255)       ccTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGc                                                                                                                               <  1:385940/140‑1 (MQ=255)        cTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCAt                                                                                                                                      >  1:574575/1‑132 (MQ=255)           ccTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGCGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATcc                                                                                                                           <  2:831267/140‑1 (MQ=255)             tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCa                                                                                                                         <  1:288659/140‑1 (MQ=255)                 cccAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGc                                                                                                                     >  2:132779/1‑140 (MQ=255)                    aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCa                                                                                                                         <  2:346077/133‑1 (MQ=255)                    aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCa                                                                                                                         >  1:346077/1‑133 (MQ=255)                    aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATa                                                                                                                  >  1:984198/1‑140 (MQ=255)                    aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATa                                                                                                                  >  1:677838/1‑140 (MQ=255)                     gcgcTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATaa                                                                                                                 >  1:979604/1‑140 (MQ=255)                       gcTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGc                                                                                                               <  2:796412/140‑1 (MQ=255)                                 cTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATaa                                                                                                     >  2:1009595/1‑140 (MQ=255)                                          ggTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCt                                                                                            <  2:207617/140‑1 (MQ=255)                                           gTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCtt                                                                                           <  2:43486/140‑1 (MQ=255)                                           gTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCtt                                                                                           >  2:788260/1‑140 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACgg                                                                                                 >  2:206276/1‑133 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACgg                                                                                                 <  2:117060/133‑1 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACgg                                                                                                 >  1:117060/1‑133 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACgg                                                                                                 <  1:206276/133‑1 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa                                                                                          >  1:206167/1‑140 (MQ=255)                                            tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa                                                                                          >  1:491449/1‑140 (MQ=255)                                                aGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGcc                                                                                      <  2:491449/140‑1 (MQ=255)                                                aGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGcc                                                                                      <  1:132779/140‑1 (MQ=255)                                                 ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACggg                                                                                                <  2:578619/129‑1 (MQ=255)                                                 ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACggg                                                                                                >  1:578619/1‑129 (MQ=255)                                                       aTGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTg                                                                               <  1:297569/140‑1 (MQ=255)                                                        tGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGt                                                                              <  1:484648/140‑1 (MQ=255)                                                         gCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTa                                                                             <  1:84297/140‑1 (MQ=255)                                                         gCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTa                                                                             <  1:1009595/140‑1 (MQ=255)                                                          ccGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTaa                                                                            <  2:677838/140‑1 (MQ=255)                                                          ccGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTaa                                                                            <  2:1015051/140‑1 (MQ=255)                                                          ccGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTaa                                                                            <  2:406511/140‑1 (MQ=255)                                                           cGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAg                                                                           <  1:187059/140‑1 (MQ=255)                                                             aaGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAgtg                                                                         >  1:456611/1‑140 (MQ=255)                                                             aaGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAgtg                                                                         >  1:410684/1‑140 (MQ=255)                                                                    ggCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCa                                                                  >  2:268490/1‑140 (MQ=255)                                                                      cAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATg                                                                <  1:268490/140‑1 (MQ=255)                                                                       agagGGCACGGATGTTCGCCCCGTCCTGCGAGGCGACCAAAACAAACTCAGTACGTACTGACATGGTATCTCTCGCATCCCAGGGCATAAGCGAATTCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTATACCATGt                                                               <  2:107180/140‑1 (MQ=255)                                                                              aCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa                                                        >  2:954881/1‑140 (MQ=255)                                                                              aCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa                                                        <  1:140174/140‑1 (MQ=255)                                                                              aCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa                                                        <  2:632650/140‑1 (MQ=255)                                                                                ggATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa                                                        <  2:913106/138‑1 (MQ=255)                                                                                ggATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa                                                        >  1:913106/1‑138 (MQ=255)                                                                                            cGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTAt                                          >  1:144428/1‑140 (MQ=255)                                                                                              tCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGt                                        >  1:60834/1‑140 (MQ=255)                                                                                                cTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTcc                                      <  2:984198/140‑1 (MQ=255)                                                                                                cTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTcc                                      <  2:456611/140‑1 (MQ=255)                                                                                                  gCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTcccc                                    <  2:410074/140‑1 (MQ=255)                                                                                                        cGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa                                           <  2:54745/127‑1 (MQ=255)                                                                                                        cGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa                                           >  1:54745/1‑127 (MQ=255)                                                                                                        cGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCg                              >  2:478131/1‑140 (MQ=255)                                                                                                        cGAACAAAACAAACTCAGTACGTAATGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCg                              >  2:973326/1‑140 (MQ=255)                                                                                                                               aaTGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGa       >  2:758308/1‑140 (MQ=255)                                                                                                                               aaTGACATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGa       >  2:1006588/1‑140 (MQ=255)                                                                                                                                    cATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa  >  1:416641/1‑140 (MQ=255)                                                                                                                                    cATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa  <  1:973326/140‑1 (MQ=255)                                                                                                                                    cATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa  >  1:412957/1‑140 (MQ=255)                                                                                                                                    cATGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa  >  2:196528/1‑140 (MQ=255)                                                                                                                                      tGGCATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTg    <  1:367710/136‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       GCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCA  >  NC_000913/281814‑282084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑