Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,219,925 A→G pseudogene (325/2648 nt) ycgH → putative transporter component, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,219,9250AG100.0% 231.2 / NA 63pseudogene (325/2648 nt)ycgHputative transporter component, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/24);  total (39/24)

GCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGACCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCGGGACTTTTAAG  >  NC_000913/1219793‑1220061
                                                                                                                                    |                                                                                                                                        
gCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTgg                                                                                                                                   <  1:9277/140‑1 (MQ=255)
  tgtgAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGaa                                                                                                                                 <  1:520151/140‑1 (MQ=255)
            gATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGa                                                                                                                       >  1:763634/1‑140 (MQ=255)
            gATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGa                                                                                                                       >  1:555390/1‑140 (MQ=255)
                             atatatAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGa                                                                                                      >  1:854556/1‑140 (MQ=255)
                              tatataAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGAt                                                                                                     >  1:13743/1‑140 (MQ=255)
                                 ataaataaTGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAc                                                                                                  >  1:249334/1‑140 (MQ=255)
                                    aataatGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAcagc                                                                                               <  2:959739/140‑1 (MQ=255)
                                      taatGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAcagcca                                                                                             <  2:283487/140‑1 (MQ=255)
                                      taatGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAcagcca                                                                                             >  1:781446/1‑140 (MQ=255)
                                         tGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAgcg                                                                                          >  2:495356/1‑140 (MQ=255)
                                               tgtgATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCagtag                                                                                    >  2:643543/1‑140 (MQ=255)
                                                gtgATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCagtagt                                                                                   >  1:449254/1‑140 (MQ=255)
                                                  gatgaCTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCa                                                                                 <  1:55449/140‑1 (MQ=255)
                                                    tgaCTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAcagc                                                                                               >  2:693927/1‑124 (MQ=255)
                                                    tgaCTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAAcagc                                                                                               <  1:693927/124‑1 (MQ=255)
                                                         aGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAAtt                                                                          >  1:503028/1‑140 (MQ=255)
                                                             gtgATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTtggt                                                                      >  1:44642/1‑140 (MQ=255)
                                                                aTGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGc                                                                   >  2:176899/1‑140 (MQ=255)
                                                                aTGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGc                                                                   >  2:29778/1‑140 (MQ=255)
                                                                aTGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGc                                                                   >  1:32551/1‑140 (MQ=255)
                                                                 tGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCa                                                                  <  2:449254/140‑1 (MQ=255)
                                                                 tGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCa                                                                  <  2:503028/140‑1 (MQ=255)
                                                                  ggATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAc                                                                 <  2:535180/140‑1 (MQ=255)
                                                                   gATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAcc                                                                <  2:44642/140‑1 (MQ=255)
                                                                       ttATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAc                                                                 >  2:622392/1‑135 (MQ=255)
                                                                       ttATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAc                                                                 <  1:622392/135‑1 (MQ=255)
                                                                        tATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCtt                                                           >  2:888175/1‑140 (MQ=255)
                                                                               tttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCa                                                                  >  2:512537/1‑126 (MQ=255)
                                                                               tttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCa                                                                  <  1:512537/126‑1 (MQ=255)
                                                                               tttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAAt                                                    >  2:51246/1‑140 (MQ=255)
                                                                               tttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAAt                                                    <  1:476681/140‑1 (MQ=255)
                                                                               tttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAAt                                                    >  1:971905/1‑140 (MQ=255)
                                                                                ttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAcc                                                                >  2:864445/1‑127 (MQ=255)
                                                                                ttCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCAcc                                                                <  1:864445/127‑1 (MQ=255)
                                                                                  cTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGt                                                 <  1:627566/140‑1 (MQ=255)
                                                                                  cTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGt                                                 >  1:343309/1‑140 (MQ=255)
                                                                                       gATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATaa                                            >  1:964411/1‑140 (MQ=255)
                                                                                          aGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTc                                         >  2:685445/1‑140 (MQ=255)
                                                                                           gTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCa                                        <  1:495356/140‑1 (MQ=255)
                                                                                            tCAAAACAAAGGATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCag                                       >  2:687159/1‑140 (MQ=255)
                                                                                                  cAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCagtcgagt                                 <  2:32551/140‑1 (MQ=255)
                                                                                                  cAAAGTATTATATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCagtcgagt                                 <  1:685445/140‑1 (MQ=255)
                                                                                                       tattatATATAAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGt                            <  1:888175/140‑1 (MQ=255)
                                                                                                          tatatataAGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTggg                         <  2:763634/140‑1 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCagtcgag                                  <  2:556535/124‑1 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCagtcgag                                  >  1:556535/1‑124 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATAtt                  >  1:1001432/1‑140 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATAtt                  >  2:942600/1‑140 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATAtt                  >  2:254918/1‑140 (MQ=255)
                                                                                                                 aaGCGATAGCGATATTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATAtt                  >  1:850280/1‑140 (MQ=255)
                                                                                                                   gcgatagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCa                >  1:10502/1‑140 (MQ=255)
                                                                                                                   gcgatagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCa                >  1:786716/1‑140 (MQ=255)
                                                                                                                   gcgatagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGACACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCa                >  2:78795/1‑140 (MQ=255)
                                                                                                                      atagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCg             >  2:344491/1‑140 (MQ=255)
                                                                                                                      atagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCg             >  2:280388/1‑140 (MQ=255)
                                                                                                                      atagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCg             >  1:853071/1‑140 (MQ=255)
                                                                                                                      atagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGAATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCg             >  2:829217/1‑140 (MQ=255)
                                                                                                                       tagcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCgg            >  1:153404/1‑140 (MQ=255)
                                                                                                                        agcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCggg           >  1:379167/1‑140 (MQ=255)
                                                                                                                        agcgataTTAAGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCggg           <  2:850280/140‑1 (MQ=255)
                                                                                                                                 aaGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCGGGACTTTTAAg  <  2:1001432/140‑1 (MQ=255)
                                                                                                                                 aaGGCCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCGGGACTTTTAAg  <  1:254918/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
GCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTATGGTATTTCTGTTGATAGTCAAAACAAAGTATTATATATAAGCGATAGCGATATTAAGACCTCTGGAAGCGTATCTGACAAAGAAAATGGAGGGATAACAGCCAGCGCAGTAGTCAGTGAATTTGGTGGCACCATCTTTATGAATGGTGATAATTCAGTCGAGTCGGGTGGGGCATATTCAGCGGGACTTTTAAG  >  NC_000913/1219793‑1220061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: