BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,891,717	G→A	A35T (GCC→ACC)	mdtL →	efflux pump MdtL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,891,717	0	G	A	100.0%	392.8 / NA	110	A35T (GCC→ACC)	mdtL	efflux pump MdtL
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (57/53); total (57/53)

Only 100 of 111 total aligned reads displayed.

TGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTA  >  NC_000913/3891583‑3891845

tGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGc                                                                                                                             >  1:962058/1‑140 (MQ=255)

 gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCg                                                                                                                            >  1:588992/1‑140 (MQ=255)

 gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCg                                                                                                                            >  2:1144132/1‑140 (MQ=255)

 gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCg                                                                                                                            <  2:369626/140‑1 (MQ=255)

  cGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGa                                                                                                                           >  2:1164412/1‑140 (MQ=255)

  cGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGa                                                                                                                           >  1:628769/1‑140 (MQ=255)

  cGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGa                                                                                                                           >  1:340453/1‑140 (MQ=255)

    tCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAg                                                                                                                         <  1:884921/140‑1 (MQ=255)

    tCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAg                                                                                                                         >  1:279537/1‑140 (MQ=255)

      aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAgcg                                                                                                                       <  1:254675/140‑1 (MQ=255)

      aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAgc                                                                                                                        >  1:1339174/1‑139 (MQ=255)

      aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAgc                                                                                                                        <  2:1339174/139‑1 (MQ=255)

       ccTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAgcgc                                                                                                                      >  1:205568/1‑140 (MQ=255)

        cTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCa                                                                                                                     <  2:1308617/140‑1 (MQ=255)

          tACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGt                                                                                                                   >  1:133365/1‑140 (MQ=255)

          tACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGt                                                                                                                   >  2:117778/1‑140 (MQ=255)

            cTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGAAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTg                                                                                                                 >  2:838823/1‑140 (MQ=255)

             tATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGc                                                                                                                >  2:219619/1‑140 (MQ=255)

             tATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGc                                                                                                                <  2:279537/140‑1 (MQ=255)

               tCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCat                                                                                                              <  2:1389443/140‑1 (MQ=255)

                 aGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCatat                                                                                                            >  1:67659/1‑140 (MQ=255)

                 aGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCatat                                                                                                            >  1:528277/1‑140 (MQ=255)

                 aGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCatat                                                                                                            >  1:420887/1‑140 (MQ=255)

                  ggACGCTTTAGCCCATGTCCCGCTTTTTGCTTTGTAGTTTTGCGCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATAtt                                                                                                           >  2:61852/1‑140 (MQ=255)

                  ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATAtt                                                                                                           >  1:209428/1‑140 (MQ=255)

                  ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATAtt                                                                                                           >  2:1001496/1‑140 (MQ=255)

                  ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATAtt                                                                                                           >  2:844957/1‑140 (MQ=255)

                     cGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCg                                                                                                        >  1:479837/1‑140 (MQ=255)

                     cGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCg                                                                                                        <  1:286806/140‑1 (MQ=255)

                     cGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCg                                                                                                        >  1:1135341/1‑140 (MQ=255)

                      gCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGt                                                                                                       <  2:586459/140‑1 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      <  2:962058/140‑1 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      <  2:1123941/140‑1 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      >  1:1369203/1‑140 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      >  1:113604/1‑140 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      <  1:14097/140‑1 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      >  2:1371263/1‑140 (MQ=255)

                       cTTTAGCCCATGTCCCGCTTTTTGATTTGAAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      <  1:838823/140‑1 (MQ=255)

                         ttAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTtct                                                                                                    >  1:816924/1‑140 (MQ=255)

                          tAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTtctc                                                                                                   <  2:862068/140‑1 (MQ=255)

                                 tGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTatat                                                                                            <  2:22098/140‑1 (MQ=255)

                                 tGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTatat                                                                                            <  2:340453/140‑1 (MQ=255)

                                 tGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTatat                                                                                            <  2:479837/140‑1 (MQ=255)

                                  gTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCg                                                                                                        <  1:990030/127‑1 (MQ=255)

                                  gTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCg                                                                                                        >  2:990030/1‑127 (MQ=255)

                                  gTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      >  1:57131/1‑129 (MQ=255)

                                  gTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGtt                                                                                                      <  2:57131/129‑1 (MQ=255)

                                       gCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCg                                                                                      <  1:552216/140‑1 (MQ=255)

                                            ttGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGAt                                                                                 <  1:1001496/140‑1 (MQ=255)

                                             tGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATg                                                                                >  1:443882/1‑140 (MQ=255)

                                              gATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATgg                                                                               <  2:528277/140‑1 (MQ=255)

                                              gATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATgg                                                                               <  1:969306/140‑1 (MQ=255)

                                              gATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATgg                                                                               <  1:1104385/140‑1 (MQ=255)

                                                 ttGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAg                                                                            <  2:209428/140‑1 (MQ=255)

                                                  tGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGc                                                                           >  2:359938/1‑140 (MQ=255)

                                                   gTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCt                                                                          >  2:1028870/1‑140 (MQ=255)

                                                    tAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTg                                                                         <  1:1144132/140‑1 (MQ=255)

                                                     aGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGc                                                                        <  1:123087/140‑1 (MQ=255)

                                                      gTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCg                                                                       <  2:420887/140‑1 (MQ=255)

                                                              cTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTAtt                                                               <  1:191730/140‑1 (MQ=255)

                                                              cTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTAtt                                                               <  2:205568/140‑1 (MQ=255)

                                                               tGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTAttt                                                              <  2:363464/140‑1 (MQ=255)

                                                                      aCTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTa                                                       <  1:912641/140‑1 (MQ=255)

                                                                           aTCCCGCCGGGTTTGGTATGTCCCTCGTTGGTTTACGGCGCATGGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTg                                                  <  2:301120/140‑1 (MQ=255)

                                                                           aTCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCgg                                                         >  2:575087/1‑133 (MQ=255)

                                                                           aTCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCgg                                                         <  1:575087/133‑1 (MQ=255)

                                                                           aTCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTg                                                  >  1:951526/1‑140 (MQ=255)

                                                                           aTCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGACGTTATTTGCCGGTAAAGTg                                                  >  1:586005/1‑140 (MQ=255)

                                                                               cgccgGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCg                                              <  2:816924/140‑1 (MQ=255)

                                                                                 ccgGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTg                                                  <  1:71815/134‑1 (MQ=255)

                                                                                 ccgGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTg                                                  >  2:71815/1‑134 (MQ=255)

                                                                                   gggATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCg                                          <  1:1371263/140‑1 (MQ=255)

                                                                                      aTTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTc                                       <  1:263288/140‑1 (MQ=255)

                                                                                              gTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGaa                               >  1:686635/1‑140 (MQ=255)

                                                                                               tACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGaaa                              >  1:1328367/1‑140 (MQ=255)

                                                                                               tACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGaaa                              >  2:363543/1‑140 (MQ=255)

                                                                                                aCCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTc                                       <  2:736339/130‑1 (MQ=255)

                                                                                                aCCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTc                                       >  1:736339/1‑130 (MQ=255)

                                                                                                aCCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAg                             >  1:964655/1‑140 (MQ=255)

                                                                                                aCCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAg                             >  1:219350/1‑140 (MQ=255)

                                                                                                 ccTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGc                            >  2:17910/1‑140 (MQ=255)

                                                                                                   tCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCg                          <  2:628769/140‑1 (MQ=255)

                                                                                                   tCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCg                          <  2:1135341/140‑1 (MQ=255)

                                                                                                   tCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCg                          >  1:229186/1‑140 (MQ=255)

                                                                                                    cGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCgg                         >  2:753918/1‑140 (MQ=255)

                                                                                                    cGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCgg                         >  1:178532/1‑140 (MQ=255)

                                                                                                    cGTTGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCgg                         >  1:510922/1‑140 (MQ=255)

                                                                                                      ttGGTTTACCGCGCATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTc                       <  2:219350/140‑1 (MQ=255)

                                                                                                                 cgcATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATAGCcgg            >  2:1305977/1‑140 (MQ=255)

                                                                                                                   cATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcg          >  2:1381973/1‑140 (MQ=255)

                                                                                                                   cATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcg          <  2:113604/140‑1 (MQ=255)

                                                                                                                   cATCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcg          >  2:421452/1‑140 (MQ=255)

                                                                                                                    aTCGCCGCCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgc         >  1:76472/1‑140 (MQ=255)

                                                                                                                      cgccgcCGATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcgg       >  2:518781/1‑140 (MQ=255)

                                                                                                                        ccgccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg     <  1:753918/140‑1 (MQ=255)

                                                                                                                        ccgccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg     <  1:17910/140‑1 (MQ=255)

                                                                                                                        ccgccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg     <  1:61852/140‑1 (MQ=255)

                                                                                                                        ccgccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg     <  1:1164412/140‑1 (MQ=255)

                                                                                                                        ccgccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGACGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg     <  2:586005/140‑1 (MQ=255)

                                                                                                                           ccgATCTCAATACCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCta  >  2:1050949/1‑140 (MQ=255)

TGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTA  >  NC_000913/3891583‑3891845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`