Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,649,179	G→A	intergenic (+138/‑203)	ydfC → / → dicF	Qin prophage; uncharacterized protein YdfC/Qin prophage; small regulatory RNA DicF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,649,179	0	G	A	100.0%	281.6 / NA	80	intergenic (+138/‑203)	ydfC/dicF	Qin prophage; uncharacterized protein YdfC/Qin prophage; small regulatory RNA DicF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (32/48);  total (32/48)

AATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACGCGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGTTATTCCTTCCCCGTTGAGG  >  NC_000913/1649047‑1649314                                                                                                                                     |                                                                                                                                        aaTCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAgc                                                                                                                                  >  2:1066964/1‑140 (MQ=255)          aGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGa                                                                                                                         >  2:1177232/1‑140 (MQ=255)            cTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGATACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAgg                                                                                                                       >  2:1218369/1‑140 (MQ=255)            cTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAgg                                                                                                                       >  2:998572/1‑140 (MQ=255)            cTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAgg                                                                                                                       >  2:108305/1‑140 (MQ=255)            cTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAgg                                                                                                                       >  2:571689/1‑140 (MQ=255)              aaGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTa                                                                                                                     >  1:1413567/1‑140 (MQ=255)               aGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCTTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAg                                                                                                                    <  1:630611/140‑1 (MQ=255)               aGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAg                                                                                                                    <  1:571689/140‑1 (MQ=255)               aGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAg                                                                                                                    <  2:285474/140‑1 (MQ=255)               aGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAg                                                                                                                    <  2:323788/140‑1 (MQ=255)               aGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAg                                                                                                                    <  1:1177232/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  1:1218369/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  1:1176333/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  2:246623/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  2:217774/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  1:1365933/140‑1 (MQ=255)                ggTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGc                                                                                                                   <  1:108305/140‑1 (MQ=255)                 gTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCt                                                                                                                  <  1:326005/140‑1 (MQ=255)                 gTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCt                                                                                                                  <  2:1413567/140‑1 (MQ=255)                 gTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCt                                                                                                                  <  2:1392279/140‑1 (MQ=255)                    aGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGt                                                                                                               <  1:327529/140‑1 (MQ=255)                     gTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  2:167736/140‑1 (MQ=255)                     gTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  2:220414/140‑1 (MQ=255)                     gTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  2:23003/140‑1 (MQ=255)                     gTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  2:568427/140‑1 (MQ=255)                     gTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  1:55499/140‑1 (MQ=255)                      tAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAGAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTc                                                                                                             >  2:1318983/1‑140 (MQ=255)                           aaGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCataga                                                                                                        >  1:1165482/1‑140 (MQ=255)                               aGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGc                                                                                                    <  1:619521/140‑1 (MQ=255)                                gTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCATACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGcc                                                                                                   >  1:13882/1‑140 (MQ=255)                                gTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGcc                                                                                                   >  2:668291/1‑140 (MQ=255)                                  tctcCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTg                                                                                                 >  2:1143430/1‑140 (MQ=255)                                   ctcCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  1:1248620/126‑1 (MQ=255)                                   ctcCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              >  2:1248620/1‑126 (MQ=255)                                    tcCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              >  1:355857/1‑125 (MQ=255)                                    tcCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGtt                                                                                                              <  2:355857/125‑1 (MQ=255)                                         gggTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTaa                                                                                          >  2:126113/1‑140 (MQ=255)                                           gTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAt                                                                                        >  2:847314/1‑140 (MQ=255)                                              aGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAtttt                                                                                     >  2:782901/1‑140 (MQ=255)                                              aGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAtttt                                                                                     >  2:1108887/1‑140 (MQ=255)                                              aGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAtttt                                                                                     >  2:594291/1‑140 (MQ=255)                                              aGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAtttt                                                                                     >  2:660702/1‑140 (MQ=255)                                              aGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAAtttt                                                                                     >  2:685543/1‑140 (MQ=255)                                                gTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTtcg                                                                                   >  1:1232336/1‑140 (MQ=255)                                                 tGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCATACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTtcgt                                                                                  <  2:13882/140‑1 (MQ=255)                                                     gtgcgtgcGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGAc                                                                              >  2:1090436/1‑140 (MQ=255)                                                     gtgcgtgcGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGAc                                                                              <  2:1165482/140‑1 (MQ=255)                                                        cgtgcgCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGt                                                                           >  2:376398/1‑140 (MQ=255)                                                        cgtgcgCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGt                                                                           <  2:698400/140‑1 (MQ=255)                                                          tgcgCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTgc                                                                         >  1:463451/1‑140 (MQ=255)                                                              ccGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCtt                                                                     <  1:1066964/140‑1 (MQ=255)                                                                  acacGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCgg                                                                 <  1:1318983/140‑1 (MQ=255)                                                                  acacGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCgg                                                                 <  2:1126733/140‑1 (MQ=255)                                                                         tGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGc                                                          <  2:295058/140‑1 (MQ=255)                                                                             cATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAAcc                                                      >  2:125027/1‑140 (MQ=255)                                                                                        gACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGA‑GTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          <  1:1011441/140‑1 (MQ=255)                                                                                         aCAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          >  1:877030/1‑140 (MQ=255)                                                                                         aCAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          <  2:1232336/140‑1 (MQ=255)                                                                                         aCAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          <  1:376398/140‑1 (MQ=255)                                                                                         aCAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          <  2:559042/140‑1 (MQ=255)                                                                                         aCAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGgcg                                          <  1:594291/140‑1 (MQ=255)                                                                                           aGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGcgcg                                        <  1:1090436/140‑1 (MQ=255)                                                                                           aGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGcgcg                                        <  1:782901/140‑1 (MQ=255)                                                                                                aCTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGt                                   <  1:1108887/140‑1 (MQ=255)                                                                                                aCTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGt                                   <  1:660702/140‑1 (MQ=255)                                                                                                   gAAAGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAg                                >  2:257142/1‑140 (MQ=255)                                                                                                     aaGGATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTa                              >  1:1288954/1‑140 (MQ=255)                                                                                                       ggATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATg                            >  2:32074/1‑140 (MQ=255)                                                                                                        gATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGTCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATgg                           <  2:877030/140‑1 (MQ=255)                                                                                                        gATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATgg                           <  1:998572/140‑1 (MQ=255)                                                                                                        gATATTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATgg                           <  1:125027/140‑1 (MQ=255)                                                                                                          tatTTCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCg                         <  1:668291/140‑1 (MQ=255)                                                                                                             ttCCCTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCgggg                      <  2:1275109/140‑1 (MQ=255)                                                                                                               cccTGAAAAGTCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGtt                    <  1:32074/140‑1 (MQ=255)                                                                                                                         tCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGc                          <  1:1140972/124‑1 (MQ=255)                                                                                                                         tCAGACCATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGc                          >  2:1140972/1‑124 (MQ=255)                                                                                                                              ccATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGTTAttccttcc           >  1:817072/1‑134 (MQ=255)                                                                                                                              ccATAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGTTAttccttcc           <  2:817072/134‑1 (MQ=255)                                                                                                                                 tAACACGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGTTATTCCTTCCCCGTTGAgg  <  1:126113/140‑1 (MQ=255)                                                                                                                                     |                                                                                                                                        AATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGCGCATCCGGAACTGACAGTTTACTGAAAGGATATTTCCCTGAAAAGTCAGACCATAACGCGAAAGCGCATGGCGAGGTAGCTGGTTCATAGATAGCCTGTCGTTAAATTTTCGTCGACCGTGCGCTTCCGGTTGTGGCAACCCGCGAAATGGCGCGGCGGTAAGTATGGCGGGGTTATTCCTTCCCCGTTGAGG  >  NC_000913/1649047‑1649314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑