| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,480,626 | (C)5→4 | intergenic (+96/+12) | dsdA → / ← emrY | D‑serine ammonia‑lyase/tripartite efflux pump membrane subunit EmrY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,480,622 | 0 | C | . | 100.0% | 68.1 / NA | 17 | intergenic (+92/+16) | dsdA/emrY | D‑serine ammonia‑lyase/tripartite efflux pump membrane subunit EmrY |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (11/6); total (11/6) | |||||||||||
GGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAACCCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGTGACTGCT > NC_000913/2480491‑2480756 | ggAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCtt < 2:134511/140‑1 (MQ=255) ttCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGcaaac > 2:352086/1‑140 (MQ=255) cagcaTCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAaaccaaacca < 1:352086/140‑1 (MQ=255) tCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGAt > 1:340042/1‑140 (MQ=255) ggTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGc > 2:109130/1‑140 (MQ=255) aGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATa > 1:156144/1‑140 (MQ=255) gctgcCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAgccgcc > 1:339943/1‑140 (MQ=255) aTGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGa < 2:339943/140‑1 (MQ=255) aGATCCCCGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCa < 1:316845/140‑1 (MQ=255) cccGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAAt > 1:97590/1‑140 (MQ=255) cccGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAAt > 1:104756/1‑140 (MQ=255) cGGTCTTACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAg > 2:86060/1‑140 (MQ=255) ttACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGt < 1:86060/140‑1 (MQ=255) ttACCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGt > 2:78561/1‑140 (MQ=255) aCCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGTGa < 2:270748/140‑1 (MQ=255) aCCCGCTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACAGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGTGa > 2:243741/1‑140 (MQ=255) cTATAA‑CCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGTGActgct > 2:310392/1‑140 (MQ=255) | GGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGATCCCCGGTCTTACCCGCTATAACCCCCTCCTTTTATCATCACCCAACGCCTTTCGCTGTAAACGGCGGTTTCGCAAACCAAACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATACGGAAAATCTCATTTGCAGAAATAGAAAGTGACTGCT > NC_000913/2480491‑2480756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |