| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,804,810 | (A)7→8 | pseudogene (1717/1900 nt) | arpB → | putative ankyrin repeat protein B, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,804,803 | 1 | . | A | 100.0% | 87.9 / NA | 26 | pseudogene (1710/1900 nt) | arpB | putative ankyrin repeat protein B, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (13/13); total (13/13) | |||||||||||
TGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑AAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATA > NC_000913/1804692‑1804923 | tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa < 1:181654/140‑1 (MQ=255)tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa < 1:288868/140‑1 (MQ=255) ggATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAg < 2:293402/140‑1 (MQ=255) aTTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGtt < 2:42559/140‑1 (MQ=255) caGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTaaaa > 2:8363/1‑140 (MQ=255) caGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTaaaa > 2:266301/1‑140 (MQ=255) aaCCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCAt < 2:125136/140‑1 (MQ=255) taCATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAg < 2:102828/140‑1 (MQ=255) cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCAt > 1:1922/1‑122 (MQ=255) cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCAt < 2:1922/122‑1 (MQ=255) cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGtt > 1:65930/1‑140 (MQ=255) cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGtt > 1:233429/1‑140 (MQ=255) tGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCatat > 1:141572/1‑140 (MQ=255) tGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCatat < 2:218430/140‑1 (MQ=255) ggTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATtc < 2:65930/140‑1 (MQ=255) aTGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTTTTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATtcatca > 2:285256/1‑140 (MQ=255) tcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATta < 2:233429/140‑1 (MQ=255) cgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATtat > 1:214880/1‑140 (MQ=255) tgtTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATaa > 1:335151/1‑140 (MQ=255) tCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTg < 2:214880/140‑1 (MQ=255) tatatCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTTTTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGaa < 1:285256/140‑1 (MQ=255) tatatCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGaa > 2:268009/1‑140 (MQ=255) cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGaa > 1:93874/1‑135 (MQ=255) cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGaa < 2:93874/135‑1 (MQ=255) cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACata > 1:69419/1‑140 (MQ=255) cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACata > 1:31614/1‑140 (MQ=255) | TGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑AAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATA > NC_000913/1804692‑1804923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |