mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 59,107 | 0 | T | C | 41.7% | ‑0.2 / 10.1 | 12 | W212R (TGG→CGG) | yabP | putative uncharacterized protein YabP |
| * | NC_000913 | 1,826,926 | 0 | C | . | 31.8% | 48.7 / 21.1 | 22 | coding (1334/1344 nt) | astB | N‑succinylarginine dihydrolase |
| * | NC_000913 | 2,406,599 | 0 | G | A | 29.2% | 31.4 / 12.8 | 24 | L15L (CTG→TTG) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 27 (1.300) | 4 (0.220) | 4/242 | 1.7 | 19.6% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 9 (0.490) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||