| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 528,172 | (G)6→5 | pseudogene (224/711 nt) | ylbH → | putative RHS domain‑containing protein YlbH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 528,167 | 0 | G | . | 94.6% | 145.0 / 2.7 | 37 | pseudogene (219/711 nt) | ylbH | putative RHS domain‑containing protein YlbH |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base . (15/20); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATGGGATATA > NC_000913/528031‑528296 | aCCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAgggg > 2:116435/1‑140 (MQ=255) ccGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAggggga < 1:116435/140‑2 (MQ=255) gCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAgggggatg < 2:262832/140‑4 (MQ=255) cATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAgggggatgg < 2:79746/140‑5 (MQ=255) aTCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGa < 2:173963/140‑1 (MQ=255) cACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGt < 1:291235/140‑1 (MQ=255) cACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGt < 1:217608/140‑1 (MQ=255) cACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGt < 1:387572/140‑1 (MQ=255) gCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTGTGCGTa < 2:51688/140‑1 (MQ=255) gCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTa > 1:299187/1‑140 (MQ=255) ccGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTAt < 1:249861/140‑1 (MQ=255) ccGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTAt > 1:330617/1‑140 (MQ=255) cTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGTCTGTATGCGTATCCGCTGaa > 1:140009/1‑140 (MQ=255) gcagcaGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGaa < 2:391259/140‑1 (MQ=255) gcagcaGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCAGTATGCGTATCCGCTGAATCCGGTGaa < 2:135389/140‑1 (MQ=255) agTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTa < 2:136289/140‑1 (MQ=255) tGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGaa > 2:304885/1‑131 (MQ=255) tGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGaa < 1:304885/131‑1 (MQ=255) aTAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGCATTGATc < 2:287265/140‑1 (MQ=255) tactacAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTccc > 1:25021/1‑140 (MQ=255) actacAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCg < 2:330617/140‑1 (MQ=255) ggaaccggTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAg > 1:98771/1‑140 (MQ=255) cggTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCta < 2:302388/140‑1 (MQ=255) gTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCtaat > 1:386292/1‑140 (MQ=255) tactacGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCtaata > 2:124021/1‑140 (MQ=255) aTCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAgaagaa > 2:53573/1‑140 (MQ=255) cGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAg < 1:53573/140‑1 (MQ=255) cGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAg > 1:376961/1‑140 (MQ=255) aGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCaa < 2:140009/140‑1 (MQ=255) tCACTCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCaaa > 1:62966/1‑140 (MQ=255) tCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGc < 2:299187/140‑1 (MQ=255) tCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGc < 1:52564/140‑1 (MQ=255) tCAGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGc > 2:365711/1‑140 (MQ=255) aGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGc < 2:109462/138‑1 (MQ=255) aGGACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGc > 1:109462/1‑138 (MQ=255) gACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATgg < 2:25021/140‑1 (MQ=255) gACCCGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATgg > 1:314003/1‑140 (MQ=255) ccGATAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATGGGat > 2:188689/1‑140 (MQ=255) aTAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCa < 2:314766/131‑1 (MQ=255) aTAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCa > 1:314766/1‑131 (MQ=255) aTAGGGCTGGA‑GGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATGGGatata < 1:124021/140‑1 (MQ=255) | ACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGTCTGTATGCGTATCCGCTGAATCCGGTGAATGGTATTGATCCATTAGGGTTAAGTCCCGCAGATGTAGCGCTAATAAGAAGAAAAGATCAACTAAACCATCAAAGAGCATGGGATATA > NC_000913/528031‑528296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |