| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,114,688 | (C)5→6 | coding (4425/4563 nt) | yghJ ← | putative lipoprotein YghJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,114,683 | 1 | . | C | 100.0% | 26.8 / NA | 9 | A1477G (GCG→GGG) | yghJ | putative lipoprotein YghJ |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (6/3); total (6/3) | |||||||||||
CAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCG‑CCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCA > NC_000913/3114558‑3114808 | taGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGT‑AGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTgg > 1:339163/2‑140 (MQ=255) cTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTcgcg > 2:24517/1‑140 (MQ=255) gTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCg < 1:235444/140‑1 (MQ=255) tGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTcc < 2:296934/140‑1 (MQ=255) aGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCagg > 1:57750/1‑140 (MQ=255) aCTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGc > 2:337683/1‑140 (MQ=255) aCTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGc > 2:51851/1‑140 (MQ=255) cccTCGAAGCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTgg > 1:297641/1‑140 (MQ=255) gCTCATCTCGCTCGCCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGca < 1:24517/140‑1 (MQ=255) | CAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGGCTCACACCGCCCTCGAAGCTCATCTCGCTCG‑CCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCA > NC_000913/3114558‑3114808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |