Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2857096 | 2859633 | 2538 | 17 [0] | [0] 17 | mutS | DNA mismatch repair protein MutS |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2857095 | 0 (0.000) | 17 (0.730) | 13/276 | 0.7 | 100% | coding (3/2562 nt) | mutS | DNA mismatch repair protein MutS |
? | NC_000913 | 2859634 = | 0 (0.000) | coding (2542/2562 nt) | mutS | DNA mismatch repair protein MutS |
AACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAAGAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTAC > NC_000913/2859496‑2859770 | aaccagcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgcg > 1:384820‑M2/139‑140 (MQ=255) gcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGa < 1:1351‑M2/7‑1 (MQ=255) gcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGa < 2:78531‑M2/7‑1 (MQ=255) catcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgtgcgccttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGaa < 2:319560‑M2/8‑1 (MQ=255) cttatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACt > 1:80493‑M2/73‑140 (MQ=255) tatgtgattacaacgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccgcatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGa > 1:346049‑M2/71‑140 (MQ=255) gaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAAtaaaataaaa < 2:384820‑M2/84‑1 (MQ=255) gaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAAtaaaataaaa < 2:105812‑M2/84‑1 (MQ=255) gaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAAtaaaataaaa < 1:127069‑M2/84‑1 (MQ=255) aaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACAccc < 2:19467‑M2/90‑1 (MQ=255) aaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTg < 2:204987‑M2/92‑1 (MQ=255) aaaccatcacaccccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTg < 2:80493‑M2/92‑1 (MQ=255) cccatttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGaaa > 1:296775‑M2/37‑140 (MQ=255) catttaatatcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGc > 1:278131‑M2/35‑140 (MQ=255) atcagggaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTa < 2:346049‑M2/114‑1 (MQ=255) gaaccggacataaccccatgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGt < 2:278131‑M2/120‑1 (MQ=255) atgCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTac > 2:333604‑M2/4‑140 (MQ=255) | AACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAAGAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTAC > NC_000913/2859496‑2859770 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |