| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,270,488 | (C)7→8 | noncoding (105/377 nt) | rnpB ← | RNase P catalytic RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,270,481 | 1 | . | C | 96.4% | 91.8 / ‑2.9 | 28 | noncoding (112/377 nt) | rnpB | RNase P catalytic RNA component |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (6/21); total (6/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
CCTTGCTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTT‑CCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTG > NC_000913/3270342‑3270614 | ccTTGCTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTTCCCCGGGC‑GT‑GGG‑gtt > 2:265798/1‑140 (MQ=255) ttGCTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTTTCTCTTTTTCCCTTGTC‑GT‑GGG‑gtttc > 2:306863/1‑138 (MQ=255) ttGCTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTT‑cc < 2:25259/140‑1 (MQ=255) cTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTGCACTGGGC‑GT‑GGG‑GTT‑tcccc > 1:307708/1‑140 (MQ=255) ggAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑g < 2:187241/140‑1 (MQ=255) ggAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑g < 2:33052/140‑1 (MQ=255) aCCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTg < 2:425916/140‑1 (MQ=255) cGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTGCACTGGTC‑GTGGGG‑TTC‑CCCCCCCCGGC‑GTTTCCCGGc > 1:2798/1‑140 (MQ=255) gCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCAcc < 1:78443/140‑1 (MQ=255) gCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCAcc < 1:732262/140‑1 (MQ=255) tGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTTCCCTGGTC‑GTGGGG‑TTT‑CCCCCCCCCGC‑GTTACCTGGCACCCCGCCCCAt > 2:157861/1‑140 (MQ=255) cAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GTGGGG‑TTT‑CCCCCCCCGGC‑GGTTCCTGGCCCCCCCCCCTCTGGAggc > 2:90007/1‑138 (MQ=255) ccGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCgg < 1:700634/140‑1 (MQ=255) cgcgcgGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGa < 1:58070/140‑1 (MQ=255) cgcgGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTTCACTTGTC‑GTGGGG‑TTC‑CCCCCCCCGGC‑GGTACCTGGCACCCCGCCCCATGGAGGCCgggcc > 2:620666/1‑137 (MQ=255) cgcgGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTGCCCTGGGC‑GTGGGG‑TTC‑CCCCCCCCCGC‑GGTACCCGGCCCCCCGCCCCCTGGAGccccggcc > 2:627131/1‑135 (MQ=255) gTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTtcc < 2:495150/140‑1 (MQ=255) gcTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTcctccc < 2:91615/140‑1 (MQ=255) cgcccTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCTCCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGt < 1:556313/138‑1 (MQ=255) cACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGt < 2:596909/140‑1 (MQ=255) ttCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTTCACTGGGC‑GTGGGG‑TTT‑CCCCCCCCCGC‑GGTTCCCGGCCCCCCGCCCCCTGGAGCCCGGGCTTTTCTCCCCCCCCCCCCCCTcccc > 2:319493/1‑140 (MQ=255) ccTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAag < 1:319493/140‑1 (MQ=255) ttACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTTTCTCTCTTTCCCCGGTC‑GT‑GGG‑GTT‑CCCCCCCCCGCGGTGCCCTTGCCCCCCCCCCCTTGGGGCCCCGGCTTTCCCCCCCCCCCCCCGCCCCCCCCCAaaag > 2:21525/1‑140 (MQ=255) ttACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTTCCCCGGGC‑GTGGGG‑TTT‑CCCCCCCCCGC‑GTTACCCGGGCCCCCGCCCCCTGGAGCCCCGGCTTTTCTccccccccccccccccccccccggag > 2:556360/1‑134 (MQ=255) ccTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTTCACTGGTC‑GTGGGG‑TTT‑CCCCCCCCCGC‑GGTACCTGGCACCCCGCCCCATGGAGCCCGGACCTTCCTCCCCCCCCCCCCCCCCCCCCCCAGAGgac > 2:547842/1‑140 (MQ=255) tCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGGC‑GTGGGG‑TTT‑CCCCCCCCGGC‑GTTACCTTGCACCCCGCCCCTTGGAGCCCGGGCTTTTCTCCCCCCCCCCCCCCTCCCCCCCAGAGgacgacga > 2:434066/1‑140 (MQ=255) cccGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGgacgacgac < 1:90007/140‑1 (MQ=255) cccGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGgacgacgac < 2:307708/140‑1 (MQ=255) cTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTGCACTGGGCGGG‑GGG‑TTT‑CCCCCCCCCGC‑GGTACCCGGCCCCCCGCCCCCTGGAGCCCGGGCCTTCCTCCCCCCCCCCCCTCCCCCCCCCAGAGGGCGACGACGAAg > 2:774368/1‑140 (MQ=255) gcgGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGGCTTC‑CCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAgcggcg < 1:627131/140‑1 (MQ=255) ccATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGt < 1:157861/140‑1 (MQ=255) tctctGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgc < 1:597283/140‑1 (MQ=255) tctctGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgc < 1:547842/140‑1 (MQ=255) ctGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcg < 1:21525/140‑1 (MQ=255) ctGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcg < 1:556360/140‑1 (MQ=255) ctGTTGCACTGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcg < 1:810320/140‑1 (MQ=255) tGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCg > 2:699554/1‑126 (MQ=255) tGGTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCg < 1:699554/126‑1 (MQ=255) gTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAgg > 1:741306/1‑140 (MQ=255) gTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAgg > 1:598903/1‑140 (MQ=255) gTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAgg > 1:620775/1‑140 (MQ=255) gTC‑GT‑GGG‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAgg > 1:690726/1‑140 (MQ=255) ggg‑TTTCCCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTg > 2:612421/1‑140 (MQ=255) | CCTTGCTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTC‑GT‑GGG‑TTT‑CCCCCCCAGGC‑GTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTG > NC_000913/3270342‑3270614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |