| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,002,670 | G→A | L19L (CTG→CTA) | xdhB → | putative xanthine dehydrogenase FAD‑binding subunit XdhB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,002,670 | 0 | G | A | 98.5% | 222.0 / ‑4.9 | 65 | L19L (CTG→CTA) | xdhB | putative xanthine dehydrogenase FAD‑binding subunit XdhB |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (35/29); total (35/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
TGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGC > NC_000913/3002534‑3002800 | tGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACctactg > 2:538358/1‑140 (MQ=255) acTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCg > 2:261750/1‑140 (MQ=255) gCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGcct > 2:215402/1‑138 (MQ=255) gCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAg > 2:134418/1‑140 (MQ=255) ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg > 1:351576/1‑140 (MQ=255) ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg > 2:254331/1‑140 (MQ=255) ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg > 2:475893/1‑140 (MQ=255) ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg > 2:622050/1‑140 (MQ=255) cGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACTCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGc > 2:635115/1‑140 (MQ=255) ggTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCgg < 1:154662/140‑1 (MQ=255) ggTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCgg < 2:351576/140‑1 (MQ=255) ttATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTg > 2:108104/1‑140 (MQ=255) ttATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTg > 1:270233/1‑140 (MQ=255) tatGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCa < 1:475893/140‑1 (MQ=255) tatGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCa < 2:576185/140‑1 (MQ=255) gAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTg < 2:463607/140‑1 (MQ=255) aaGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGa < 1:108104/140‑1 (MQ=255) agagTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGAc > 1:30531/1‑140 (MQ=255) agTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGt > 1:254907/1‑140 (MQ=255) ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTa > 2:163688/1‑139 (MQ=255) ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTa < 1:163688/139‑1 (MQ=255) ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc > 2:527871/1‑140 (MQ=255) ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc > 1:26754/1‑140 (MQ=255) tCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACt > 2:342385/1‑140 (MQ=255) ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc > 2:21689/1‑138 (MQ=255) ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc < 1:21689/138‑1 (MQ=255) ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTg > 2:75984/1‑140 (MQ=255) ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTg > 1:705044/1‑140 (MQ=255) cATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGa > 2:804241/1‑140 (MQ=255) tCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGAtt < 2:416157/140‑1 (MQ=255) aGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTc < 1:245248/140‑1 (MQ=255) gattgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTcca < 2:254907/140‑1 (MQ=255) gattgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTcca < 2:663750/140‑1 (MQ=255) ttgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAGACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTccacc < 1:254331/140‑1 (MQ=255) gattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCAt < 1:332834/140‑1 (MQ=255) gattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCAt < 1:342385/140‑1 (MQ=255) aGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAAt < 1:134418/140‑1 (MQ=255) ggATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATg > 2:49334/1‑140 (MQ=255) gATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGa < 1:527871/140‑1 (MQ=255) aaCATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCg > 2:226732/1‑140 (MQ=255) aaCATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCg > 2:468653/1‑140 (MQ=255) atcatGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTa < 2:705044/140‑1 (MQ=255) tcatGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTAt < 1:538358/140‑1 (MQ=255) tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc > 2:213579/1‑140 (MQ=255) tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc > 1:285805/1‑140 (MQ=255) tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc > 2:33627/1‑140 (MQ=255) tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc > 1:650552/1‑140 (MQ=255) gTTTGATTTTGCTTCTTACCATCGCGCAGCAACTCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc < 1:635115/140‑1 (MQ=255) tGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCata < 1:207441/140‑1 (MQ=255) gATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCatat < 1:75984/140‑1 (MQ=255) aTTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc > 2:465685/1‑135 (MQ=255) aTTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc < 1:465685/135‑1 (MQ=255) tGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATAttgttg < 2:285805/140‑1 (MQ=255) gCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa < 1:291858/140‑1 (MQ=255) gCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa < 1:213579/140‑1 (MQ=255) cttcttACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACCGATTCAGCTCCACCATCACAATGACCGTTATCGCCata > 1:693922/1‑132 (MQ=255) cttcttACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACCGATTCAGCTCCACCATCACAATGACCGTTATCGCCata < 2:693922/132‑1 (MQ=255) aCCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCAt < 2:30531/140‑1 (MQ=255) tCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATc > 1:718248/1‑140 (MQ=255) cgcgCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa < 2:35311/128‑1 (MQ=255) cgcgCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa > 1:35311/1‑128 (MQ=255) cagcaACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCg > 1:778878/1‑140 (MQ=255) gCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCgggg > 1:174370/1‑140 (MQ=255) tGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTa > 2:218764/1‑140 (MQ=255) ccATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACg > 2:116100/1‑140 (MQ=255) cATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGc < 1:468653/140‑1 (MQ=255) | TGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGC > NC_000913/3002534‑3002800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |