mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,635,362 | 0 | G | A | 23.7% | 71.4 / 19.0 | 38 | H162H (CAC→CAT) | ydfN | Qin prophage; putative side tail fiber assembly protein |
| * | NC_000913 | 1,635,335 | 0 | C | T | 22.7% | 91.2 / 21.5 | 44 | T171T (ACG→ACA) | ydfN | Qin prophage; putative side tail fiber assembly protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 33 (1.340) | 4 (0.180) | 4/242 | 2.0 | 16.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 12 (0.550) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||