| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,351,288 | G→A | P580S (CCA→TCA) | arcB ← | sensory histidine kinase ArcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,351,288 | 0 | G | A | 98.4% | 206.0 / ‑4.2 | 61 | P580S (CCA→TCA) | arcB | sensory histidine kinase ArcB |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (30/30); total (31/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01 | |||||||||||
CACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACGTTCAG > NC_000913/3351151‑3351420 | cacaTCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACa > 2:1001175/1‑140 (MQ=255) acaTCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACaa > 1:839168/1‑140 (MQ=255) acaTCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACaa > 2:1130277/1‑140 (MQ=255) atcatcCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACt > 1:458024/1‑140 (MQ=255) atcatcCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACt > 2:343417/1‑140 (MQ=255) catcCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAAAGATATCCAGCCCGGTCATATCTGACAACTGa > 2:805297/1‑140 (MQ=255) ccATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAata > 2:461751/1‑140 (MQ=255) cATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAatat < 2:986212/140‑1 (MQ=255) aTTCCAGCATTGAGGTACTCTGGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATc > 2:870125/1‑140 (MQ=255) ccAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAg < 1:539327/140‑1 (MQ=255) ccAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAg < 1:870125/140‑1 (MQ=255) cATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAac < 1:1001175/140‑1 (MQ=255) aTTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAaca < 1:1130277/140‑1 (MQ=255) tGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACAcc < 2:603972/140‑1 (MQ=255) aGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCCGTCATATCTGACAACTGAATATCCAGCAACACCAg > 2:629830/1‑140 (MQ=255) ggTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAgg < 2:606695/140‑1 (MQ=255) ttgtttgtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTAtt > 1:363839/1‑140 (MQ=255) gtttgtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCg > 1:149554/1‑140 (MQ=255) ttgtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGcc < 2:149554/140‑1 (MQ=255) ttgtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGcc < 2:458024/140‑1 (MQ=255) tCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCgg > 1:158030/1‑140 (MQ=255) cTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGc < 2:997250/135‑1 (MQ=255) cTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGc > 1:997250/1‑135 (MQ=255) tttCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGtt < 1:315957/140‑1 (MQ=255) ttCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGcc > 2:37041/1‑134 (MQ=255) ttCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGcc < 1:37041/134‑1 (MQ=255) tCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTa > 2:445703/1‑140 (MQ=255) aaGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGcgccgc > 1:871167/1‑140 (MQ=255) ccaccaGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTg > 1:1129098/1‑140 (MQ=255) ccaccaGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTg > 1:1113181/1‑140 (MQ=255) accaGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCGTGcc > 2:1127473/1‑140 (MQ=255) caGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCgg > 1:567009/1‑140 (MQ=255) caGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACACCCCAACGGCCGCCTGCCCgg > 1:705986/1‑140 (MQ=255) caGCGGCGGTAAATCCTCCCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCCGTCATATCTGACAACTGAATATCCCGCAACACCAGGGCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCgg > 2:608020/1‑140 (MQ=255) caGCGCCGTTAAACCCTCGCGCGAATACGGTTTGGTCGGTTCCCGAGAAATACCCGGCCGGGTATTACCTGCAACCTGAATACCCACAACCCCCAGGCCGTA‑TCCCCCCGTTTAAACATCTCCAGCGCCGCCTTGCCGGt < 2:705986/140‑1 (MQ=255) aGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGt < 2:1129098/140‑1 (MQ=255) gcggcgGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCGCGAGAGATATCCAGCCTGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTc < 1:950405/140‑1 (MQ=255) ggTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGc < 1:1029039/140‑1 (MQ=255) ggTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGc < 1:907750/140‑1 (MQ=255) gcgcgGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGc > 2:850665/1‑140 (MQ=255) cgcgGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCTGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCt < 2:839168/140‑1 (MQ=255) gTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAAttttt < 1:856351/139‑1 (MQ=255) gTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAAttttt > 2:856351/1‑139 (MQ=255) gTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTc < 2:871167/140‑1 (MQ=255) gTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTc < 2:363839/140‑1 (MQ=255) tCACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGcac < 1:1127473/140‑1 (MQ=255) cACGAGAGATATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGcaca > 2:928124/1‑140 (MQ=255) gagagaTATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGaa < 1:445703/140‑1 (MQ=255) gagaTATCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAAcg < 1:850665/140‑1 (MQ=255) agaTCTCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACAGCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACATAAcgc < 2:1224107/140‑1 (MQ=255) tCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGcaac > 1:245210/1‑140 (MQ=255) tCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGcaac > 1:144916/1‑140 (MQ=255) tCCAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGcaac > 1:208523/1‑140 (MQ=255) ccAGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGcaaca < 2:848104/140‑1 (MQ=255) aGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAAt < 1:343417/140‑1 (MQ=255) aGCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAAt < 1:928124/140‑1 (MQ=255) gCCCGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATc > 2:944621/1‑140 (MQ=255) ccGGTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCAc > 1:1053900/1‑140 (MQ=255) gTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgtt < 1:173832/140‑1 (MQ=255) gTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgtt > 2:1104485/1‑140 (MQ=255) gTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgtt < 1:629830/140‑1 (MQ=255) gTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgtt > 1:81569/1‑140 (MQ=255) gTCATATCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgtt < 2:144916/140‑1 (MQ=255) atatCTGACAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACgttcag < 1:944621/140‑1 (MQ=255) | CACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACGTTCAG > NC_000913/3351151‑3351420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |