Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,469,150	T→C	V7A (GTA→GCA)	yfdI →	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,469,150	0	T	C	100.0%	361.8 / NA	97	V7A (GTA→GCA)	yfdI	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/50);  total (47/50)

AATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACTTACCTTT  >  NC_000913/2469014‑2469285                                                                                                                                         |                                                                                                                                        aaTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATc                                                                                                                                      <  2:566694/140‑1 (MQ=255) aaTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATc                                                                                                                                      >  1:566694/1‑140 (MQ=255)  aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCa                                                                                                                                     <  1:776794/140‑1 (MQ=255)  aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCa                                                                                                                                     <  2:1088134/140‑1 (MQ=255)  aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCa                                                                                                                                     <  1:388942/140‑1 (MQ=255)   tACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGcatcat                                                                                                                                    >  2:634667/1‑140 (MQ=255)        tttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGtat                                                                                                                               >  2:505748/1‑140 (MQ=255)        tttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGtat                                                                                                                               >  2:479422/1‑140 (MQ=255)          tttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAAGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGtatat                                                                                                                             <  1:4439/140‑1 (MQ=255)             aGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATc                                                                                                                          >  2:447723/1‑140 (MQ=255)                  gAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCttttg                                                                                                                     >  2:1011340/1‑140 (MQ=255)                  gAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCttttg                                                                                                                     >  2:382335/1‑140 (MQ=255)                               tGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTg                                                                                                        >  1:1121498/1‑140 (MQ=255)                                  aaTAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTgcgc                                                                                                     >  1:1199585/1‑140 (MQ=255)                                    tAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCt                                                                                                   <  2:1014071/140‑1 (MQ=255)                                    tAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCt                                                                                                   <  1:1011340/140‑1 (MQ=255)                                       gAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTAt                                                                                                >  1:1090321/1‑140 (MQ=255)                                           aTTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            <  2:181559/140‑1 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaa                                                                                           >  2:947739/1‑140 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaa                                                                                           >  2:1046450/1‑140 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaa                                                                                           >  1:682165/1‑140 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaa                                                                                           >  1:628937/1‑140 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            >  2:1182322/1‑139 (MQ=255)                                            ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            <  1:1182322/139‑1 (MQ=255)                                              aGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaaaa                                                                                         >  2:1210813/1‑140 (MQ=255)                                                 tGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAGATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACAt                                                                                      >  2:1133430/1‑140 (MQ=255)                                                 tGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACAt                                                                                      >  1:220192/1‑140 (MQ=255)                                                 tGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACAt                                                                                      >  1:318743/1‑140 (MQ=255)                                                  gAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            <  2:281453/133‑1 (MQ=255)                                                  gAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            >  1:281453/1‑133 (MQ=255)                                                  gAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATa                                                                                     >  1:168394/1‑140 (MQ=255)                                                    atatatTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAat                                                                                   >  2:865502/1‑140 (MQ=255)                                                    atatatTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAat                                                                                   >  2:462660/1‑140 (MQ=255)                                                     tatatTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAatg                                                                                  <  1:447723/140‑1 (MQ=255)                                                     tatatTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAatg                                                                                  <  2:464794/140‑1 (MQ=255)                                                     tatatTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAatg                                                                                  <  1:357392/140‑1 (MQ=255)                                                         ttGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGt                                                                              >  2:150460/1‑140 (MQ=255)                                                          tGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGtt                                                                             <  2:986474/140‑1 (MQ=255)                                                          tGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGtt                                                                             <  2:840669/140‑1 (MQ=255)                                                            gACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTaa                                                                           <  1:1057575/140‑1 (MQ=255)                                                            gACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTaa                                                                           >  1:39206/1‑140 (MQ=255)                                                             aCGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            >  1:839400/1‑122 (MQ=255)                                                             aCGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaa                                                                                            <  2:839400/122‑1 (MQ=255)                                                             aCGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTaaa                                                                          >  1:372136/1‑140 (MQ=255)                                                              cGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAAt                                                                         >  2:875583/1‑140 (MQ=255)                                                              cGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAAt                                                                         >  2:435550/1‑140 (MQ=255)                                                              cGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAAt                                                                         >  2:417877/1‑140 (MQ=255)                                                              cGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAAt                                                                         >  2:292639/1‑140 (MQ=255)                                                                  catacatTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACAt                                                                     <  2:318743/140‑1 (MQ=255)                                                                    tacatTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCt                                                                   <  1:865502/140‑1 (MQ=255)                                                                    tacatTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCt                                                                   <  2:682165/140‑1 (MQ=255)                                                                       atTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGAt                                                                <  2:379399/140‑1 (MQ=255)                                                                        ttGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGAtt                                                               <  2:699094/140‑1 (MQ=255)                                                                           aaaCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCg                                                            >  1:1218334/1‑140 (MQ=255)                                                                           aaaCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCg                                                            >  2:306929/1‑140 (MQ=255)                                                                            aaCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCgg                                                           <  2:1218334/140‑1 (MQ=255)                                                                             aCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCt                                                                   <  2:579779/131‑1 (MQ=255)                                                                             aCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCt                                                                   >  1:579779/1‑131 (MQ=255)                                                                             aCCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGa                                                          >  1:797996/1‑140 (MQ=255)                                                                              ccAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGaa                                                         <  2:628937/140‑1 (MQ=255)                                                                              ccAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGaa                                                         <  2:1090321/140‑1 (MQ=255)                                                                              ccAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGaa                                                         <  2:331281/140‑1 (MQ=255)                                                                              ccAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGaa                                                         <  1:658675/140‑1 (MQ=255)                                                                               cAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                        <  2:213687/140‑1 (MQ=255)                                                                               cAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                        >  1:310681/1‑140 (MQ=255)                                                                               cAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAACAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                        >  2:533072/1‑140 (MQ=255)                                                                                 aaaaaCGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAagag                                                      >  1:1208713/1‑140 (MQ=255)                                                                                 aaaaaCGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                        <  1:471900/138‑1 (MQ=255)                                                                                 aaaaaCGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                        >  2:471900/1‑138 (MQ=255)                                                                                 aaaaaCGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAACAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAagag                                                      <  1:533072/140‑1 (MQ=255)                                                                                      cGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccatt                                                 <  2:372136/140‑1 (MQ=255)                                                                                      cGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccatt                                                 <  2:1199585/140‑1 (MQ=255)                                                                                      cGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccatt                                                 <  2:797996/140‑1 (MQ=255)                                                                                           gAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagcc                                            <  2:148588/140‑1 (MQ=255)                                                                                            aaaTACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagcca                                           <  1:292282/140‑1 (MQ=255)                                                                                             aaTACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagccat                                          <  1:505748/140‑1 (MQ=255)                                                                                              aTACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagccatt                                         >  1:728408/1‑140 (MQ=255)                                                                                                       caAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGa                                >  2:931634/1‑140 (MQ=255)                                                                                                       caAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGa                                >  2:717153/1‑140 (MQ=255)                                                                                                       caAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGa                                <  2:1101167/140‑1 (MQ=255)                                                                                                       caAGAGAGTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGa                                >  2:1018685/1‑140 (MQ=255)                                                                                                           agagTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATa                            <  1:947739/140‑1 (MQ=255)                                                                                                             agTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagcc                                            <  2:698383/122‑1 (MQ=255)                                                                                                             agTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagcc                                            >  1:698383/1‑122 (MQ=255)                                                                                                              gTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCa                         >  2:136608/1‑140 (MQ=255)                                                                                                              gTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCa                         <  1:1074013/140‑1 (MQ=255)                                                                                                              gTCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCa                         >  2:1074013/1‑140 (MQ=255)                                                                                                               tCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAg                        >  2:694604/1‑140 (MQ=255)                                                                                                               tCAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAg                        >  2:373118/1‑140 (MQ=255)                                                                                                                cAAAAAATGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGc                       <  2:767466/140‑1 (MQ=255)                                                                                                                  aaaaaTGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCAt                     <  1:824092/140‑1 (MQ=255)                                                                                                                  aaaaaTGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCAt                     <  1:136608/140‑1 (MQ=255)                                                                                                                       tGAATAAAGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACa                <  1:1046450/140‑1 (MQ=255)                                                                                                                              aGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACt         <  1:717153/140‑1 (MQ=255)                                                                                                                              aGCAATAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACt         <  1:1133430/140‑1 (MQ=255)                                                                                                                                 aaTAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACTTAc      <  1:382335/140‑1 (MQ=255)                                                                                                                                   tAAAAGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACTTACCt    <  2:1208713/140‑1 (MQ=255)                                                                                                                                     aaaGCATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACTTACCttt  <  2:856000/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                        AATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACTTACCTTT  >  NC_000913/2469014‑2469285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑