BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,188,777	A→G	pseudogene (1346/2434 nt)	yqiG →	putative outer membrane usher protein YqiG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,188,777	0	A	G	100.0%	379.3 / NA	102	pseudogene (1346/2434 nt)	yqiG	putative outer membrane usher protein YqiG
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/54); total (48/54)

Only 100 of 102 total aligned reads displayed.

GATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTA  >  NC_000913/3188643‑3188906

gATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatg                                                                                                                              <  2:350541/140‑1 (MQ=255)

 aTCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             <  1:521747/140‑1 (MQ=255)

 aTCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             >  2:908692/1‑140 (MQ=255)

 aTCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             <  2:730011/140‑1 (MQ=255)

  tCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatgaa                                                                                                                            >  1:906080/1‑140 (MQ=255)

    tGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatgaatg                                                                                                                          >  1:28245/1‑140 (MQ=255)

     gATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAatgaatga                                                                                                                         <  2:641869/140‑1 (MQ=255)

     gATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAatgaatga                                                                                                                         <  2:541610/140‑1 (MQ=255)

      aTGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             <  1:393276/135‑1 (MQ=255)

      aTGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             >  2:393276/1‑135 (MQ=255)

       tGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATgaatgaat                                                                                                                       <  2:906080/140‑1 (MQ=255)

       tGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATgaatgaat                                                                                                                       <  1:595868/140‑1 (MQ=255)

         cTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAatat                                                                                                                     <  1:706736/140‑1 (MQ=255)

         cTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAatat                                                                                                                     <  1:700716/140‑1 (MQ=255)

          tCAGTTGCATAATCAGTATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAatata                                                                                                                    >  2:716706/1‑140 (MQ=255)

          tCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatgaat                                                                                                                           >  1:912789/1‑133 (MQ=255)

          tCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatgaat                                                                                                                           <  2:912789/133‑1 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             >  2:1052404/1‑129 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCaatga                                                                                                                             <  1:1052404/129‑1 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:377357/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  2:928021/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:1075839/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:423801/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:843897/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:178727/1‑140 (MQ=255)

            aGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATc                                                                                                                  >  1:637826/1‑140 (MQ=255)

              ttGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCaa                                                                                                                <  1:38995/140‑1 (MQ=255)

              ttGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCaa                                                                                                                <  2:1075839/140‑1 (MQ=255)

              ttGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCaa                                                                                                                >  1:923401/1‑140 (MQ=255)

              ttGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCaa                                                                                                                <  1:450651/140‑1 (MQ=255)

                gCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATg                                                                                                              >  2:160365/1‑140 (MQ=255)

                gCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATg                                                                                                              >  1:994994/1‑140 (MQ=255)

                gCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATg                                                                                                              >  2:1114251/1‑140 (MQ=255)

                 cATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGa                                                                                                             >  1:397758/1‑140 (MQ=255)

                 cATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGa                                                                                                             >  2:445934/1‑140 (MQ=255)

                   tAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAAtgaatgaa                                                                                                                        >  2:870819/1‑127 (MQ=255)

                   tAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAAtgaatgaa                                                                                                                        <  1:870819/127‑1 (MQ=255)

                   tAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGaca                                                                                                           <  2:268581/140‑1 (MQ=255)

                        aGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAAc                                                                                                      >  2:862599/1‑140 (MQ=255)

                        aGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAAc                                                                                                      <  2:423801/140‑1 (MQ=255)

                           aTAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCAt                                                                                                   >  1:97868/1‑140 (MQ=255)

                               aGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTaca                                                                                               <  1:1100502/140‑1 (MQ=255)

                                    cGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAAt                                                                                          >  2:352600/1‑140 (MQ=255)

                                    cGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAAt                                                                                          >  1:757525/1‑140 (MQ=255)

                                         tataGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCa                                                                                     >  1:142710/1‑140 (MQ=255)

                                         tataGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCa                                                                                     <  2:921543/140‑1 (MQ=255)

                                                aCCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaa                                                                              >  1:903212/1‑140 (MQ=255)

                                                 ccGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACTAATTATCAGAATGaaa                                                                             >  1:84753/1‑140 (MQ=255)

                                                 ccGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaa                                                                             >  2:163890/1‑140 (MQ=255)

                                                   gcgcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           <  2:647443/140‑1 (MQ=255)

                                                   gcgcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           >  1:798171/1‑140 (MQ=255)

                                                     gcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           >  2:862229/1‑138 (MQ=255)

                                                     gcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           <  1:862229/138‑1 (MQ=255)

                                                     gcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAaga                                                                         <  1:655708/140‑1 (MQ=255)

                                                     gcTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAaga                                                                         <  1:1075502/140‑1 (MQ=255)

                                                      cTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAagag                                                                        >  1:459206/1‑140 (MQ=255)

                                                      cTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAagag                                                                        >  1:646359/1‑140 (MQ=255)

                                                                 aaaCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGt                                                             <  2:798171/140‑1 (MQ=255)

                                                                 aaaCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGt                                                             <  2:377357/140‑1 (MQ=255)

                                                                 aaaCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGt                                                             <  2:178727/140‑1 (MQ=255)

                                                                 aaaCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGt                                                             <  2:54954/140‑1 (MQ=255)

                                                                   aCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           <  2:369638/124‑1 (MQ=255)

                                                                   aCGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGaaaaa                                                                           >  1:369638/1‑124 (MQ=255)

                                                                     gTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATAAGAATGAAAAAGAGAGTTATATTGt                                                             <  1:103767/136‑1 (MQ=255)

                                                                     gTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATAAGAATGAAAAAGAGAGTTATATTGt                                                             >  2:103767/1‑136 (MQ=255)

                                                                      ttttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGt                                                        <  2:843897/140‑1 (MQ=255)

                                                                       tttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGtt                                                       <  2:142710/140‑1 (MQ=255)

                                                                       tttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGtt                                                       >  2:783975/1‑140 (MQ=255)

                                                                       tttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGtt                                                       >  1:1109179/1‑140 (MQ=255)

                                                                       tttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATAACAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGtt                                                       >  2:329999/1‑140 (MQ=255)

                                                                        ttGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACTAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGttt                                                      <  2:84753/140‑1 (MQ=255)

                                                                           aaTCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAAc                                                   <  1:1114251/140‑1 (MQ=255)

                                                                           aaTCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAAc                                                   <  1:880867/140‑1 (MQ=255)

                                                                           aaTCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAAc                                                   <  1:160365/140‑1 (MQ=255)

                                                                             tCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCa                                                 <  2:28245/140‑1 (MQ=255)

                                                                             tCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCa                                                 <  2:757525/140‑1 (MQ=255)

                                                                              cTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAg                                                >  1:1118662/1‑140 (MQ=255)

                                                                               tACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGt                                               <  2:646359/140‑1 (MQ=255)

                                                                                     tAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTg                                         <  1:163890/140‑1 (MQ=255)

                                                                                      aGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGa                                        <  1:495911/140‑1 (MQ=255)

                                                                                       gCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGaa                                       >  1:164295/1‑140 (MQ=255)

                                                                                            cTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGaa                                       <  1:591682/135‑1 (MQ=255)

                                                                                            cTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGaa                                       >  2:591682/1‑135 (MQ=255)

                                                                                            cTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCAtt                                  <  2:459206/140‑1 (MQ=255)

                                                                                             tCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTa                                 <  2:397758/140‑1 (MQ=255)

                                                                                               aCTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAg                               <  1:862599/140‑1 (MQ=255)

                                                                                                        ggTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAatac                      <  1:716706/140‑1 (MQ=255)

                                                                                                         gTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTaa                          <  2:177919/135‑1 (MQ=255)

                                                                                                         gTTACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTaa                          >  1:177919/1‑135 (MQ=255)

                                                                                                           tACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTATCCAGTATCTTGAATCATTAAGGTTAAatacata                   >  1:951520/1‑140 (MQ=255)

                                                                                                           tACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTa                           <  2:705274/132‑1 (MQ=255)

                                                                                                           tACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTa                           >  1:705274/1‑132 (MQ=255)

                                                                                                           tACCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAatacata                   >  1:801692/1‑140 (MQ=255)

                                                                                                            aCCGTTTCTCTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAatacatac                  <  1:783975/140‑1 (MQ=255)

                                                                                                                  tctcTGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGt            <  2:286713/140‑1 (MQ=255)

                                                                                                                   ctctGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGtt           >  1:424781/1‑140 (MQ=255)

                                                                                                                     ctGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTg         <  2:1118662/140‑1 (MQ=255)

                                                                                                                      tGATAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTgg        >  1:333841/1‑140 (MQ=255)

                                                                                                                        aTAAAAACTTTGTGGCAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCt      >  1:323780/1‑140 (MQ=255)

                                                                                                                            aaaCTTTGTGGCAATGAATGAATATAACAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTa  <  1:329999/140‑1 (MQ=255)

GATCTGATGCTCAGTTGCATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTAGCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGACACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTA  >  NC_000913/3188643‑3188906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`