Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,632,658 | A→G | G642G (GGA→GGG) | slt → | soluble lytic murein transglycosylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,632,658 | 0 | A | G | 98.5% | 244.4 / ‑3.2 | 67 | coding (1926/1938 nt) | slt | soluble lytic murein transglycosylase |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (25/41); minor base . (0/1); total (25/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.38e-01 |
TCGACGCAGTGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGC > NC_000913/4632522‑4632788 | tCGACGCAGTGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGcgt < 1:42221/140‑1 (MQ=255) tCGACGCAGTGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGcgt < 2:535601/140‑1 (MQ=255) cAGTGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTAc < 2:404833/140‑1 (MQ=255) tGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGa > 2:621419/1‑140 (MQ=255) cATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGG‑CGTCGTTACTGATCCg < 1:575431/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTATTGATCCg < 1:23127/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 1:967547/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 1:621419/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 1:173910/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 2:1128867/140‑1 (MQ=255) aTTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 1:1116155/140‑1 (MQ=255) tttGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGc < 2:29646/140‑1 (MQ=255) ttGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCa < 1:437291/140‑1 (MQ=255) ttGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCa < 1:314096/140‑1 (MQ=255) ttGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCa < 1:403864/140‑1 (MQ=255) gTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg < 2:942677/136‑1 (MQ=255) gTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCg > 1:942677/1‑136 (MQ=255) agagTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTa < 1:490223/140‑1 (MQ=255) agTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATg > 2:427905/1‑140 (MQ=255) tATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGat > 2:278319/1‑140 (MQ=255) ttCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATcc > 2:667778/1‑125 (MQ=255) ttCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATcc < 1:667778/125‑1 (MQ=255) ttCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGatat > 2:189195/1‑140 (MQ=255) ttCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGatat > 2:732465/1‑140 (MQ=255) tCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATg < 2:1139129/140‑1 (MQ=255) ttCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTAt > 2:456774/1‑140 (MQ=255) tctcCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATc > 1:120579/1‑140 (MQ=255) tcCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCTACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGt < 2:1022074/140‑1 (MQ=255) tcCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGtt < 1:646484/124‑1 (MQ=255) tcCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGtt > 2:646484/1‑124 (MQ=255) tcCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGt < 2:869941/140‑1 (MQ=255) gcgcgGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTa < 1:667565/140‑1 (MQ=255) cgcgGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAg > 1:844612/1‑140 (MQ=255) gTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAg < 2:844612/140‑1 (MQ=255) ttATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGt < 1:278319/140‑1 (MQ=255) tATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTa < 1:214230/140‑1 (MQ=255) aaCGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCgggg > 1:192320/1‑140 (MQ=255) aCGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCggggg < 2:632039/140‑1 (MQ=255) tGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg < 1:702920/140‑1 (MQ=255) gCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc > 2:1012333/1‑140 (MQ=255) gCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc > 1:1130353/1‑140 (MQ=255) tGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt > 1:405385/1‑140 (MQ=255) ttATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg < 2:192320/140‑1 (MQ=255) cTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTccccc > 2:467521/1‑140 (MQ=255) cTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTccccc > 2:539567/1‑140 (MQ=255) ttACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCg < 1:456774/140‑1 (MQ=255) gCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt > 1:128520/1‑140 (MQ=255) tATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATgg < 1:1012333/140‑1 (MQ=255) tATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATgg < 1:288059/140‑1 (MQ=255) tttCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg < 1:539567/140‑1 (MQ=255) tCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:524336/140‑1 (MQ=255) gggATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtatta > 2:155462/1‑140 (MQ=255) gggATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtatta < 1:189195/140‑1 (MQ=255) gATAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATg > 2:278424/1‑140 (MQ=255) tAAACCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGc > 1:1124360/1‑140 (MQ=255) aCCGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCca > 2:9415/1‑140 (MQ=255) cGACGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaac < 2:1124360/140‑1 (MQ=255) aCGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa < 1:732465/140‑1 (MQ=255) aCGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa < 2:120579/140‑1 (MQ=255) aCGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa < 1:427905/140‑1 (MQ=255) cGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 2:516718/1‑139 (MQ=255) cGTTGATGAGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa < 1:516718/139‑1 (MQ=255) gatgaGCGCCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAcc < 1:155462/140‑1 (MQ=255) cgcCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTc > 2:871815/1‑140 (MQ=255) gcCACGGAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTca > 2:1068612/1‑140 (MQ=255) ggAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCagcagc < 1:871815/140‑1 (MQ=255) ggAATGGGGGCGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCagcagc < 1:467521/140‑1 (MQ=255) | TCGACGCAGTGGCATTTGTCGAGAGTATTCCATTCTCCGAGACGCGCGGTTATGTGAAGAACGTGCTGGCTTATGACGCTTACTACCGCTATTTCATGGGGGATAAACCGACGTTGATGAGCGCCACGGAATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGC > NC_000913/4632522‑4632788 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |